Desulfurispirillum indicum: Selin_1287
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Entry
Selin_1287 CDS
T01383
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
din
Desulfurispirillum indicum
Brite
KEGG Orthology (KO) [BR:
din00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
din03016
]
Selin_1287
Enzymes [BR:
din01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Selin_1287
Transfer RNA biogenesis [BR:
din03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Selin_1287
Prokaryotic type
tRNA splicing ligases
Selin_1287
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADU66022
UniProt:
E6W5J1
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All DBs
Position
complement(1421072..1422184)
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AA seq
370 aa
AA seq
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MKKTNRPAPYHIFGNDIEPAAMEQFLSAMDQPYVVRGALMPDAHKGYALPIGAVVATDGV
VVPAWVGYDIGCGVLGVPTTFPLSEVRQNAAAIFRSLYEHIPVGSAHNQKPVPWNCSHLP
RSAVLEEYFRRKGLYQLGTLGSGNHFLEIGYDELERIWILVHSGSRHLGHTMATHYMKVA
SKSSRAREGHYALDVRSAAGKAYIDDMHFCLSFALENRLEIARRAAEVLSRRINGSPQWV
SLINRNHNHAALYNGWWIHRKGATHAESGMAGIIPGNMRDGSFVVEGLGNPKALWSSSHG
AGRLLGRAEAKRELSLHEFRQSMESVVACVQESTLDEAPMAYKNIHAVLEAQSELVVIRH
HVQPLINIKG
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagacgaaccgcccggccccctatcacatttttggcaacgacattgagccggca
gccatggaacagtttctcagcgccatggatcagccctatgtggttcgcggagcactgatg
cccgatgcccataagggctacgcgctgcctataggagccgtcgtcgctaccgatggtgtt
gttgtgcccgcatgggtggggtacgacatcggctgcggtgtcctgggtgtgcccaccaca
tttcccttgtctgaagtccgccagaatgccgcagccattttccgctctctctacgaacac
atccctgtgggttctgcccacaaccaaaagcctgtgccctggaactgttcccatcttcca
cgctcagcggttctggaagagtacttccgacgcaaagggctttatcagcttggtaccctg
ggctcaggcaatcactttctcgagatcggttacgatgaactggagcggatctggattctc
gtacactccggttcccgtcatctggggcataccatggccacacactacatgaaggtcgcc
agtaagagctcaagggcccgcgaaggccactacgcactggatgtccgctcggcagctggc
aaagcttatattgatgatatgcacttctgcctgtcgtttgccctggaaaatcgtctcgaa
attgcgcgcagagcagcagaagtgctctctcggcgcatcaatggttccccacagtgggtg
tccctgatcaatcgcaaccacaaccacgcggccctgtataacggctggtggatccatcgc
aaaggggcaacgcacgcggaaagtggcatggctggtattattcccggcaatatgcgtgac
gggagttttgtggtggaaggactgggcaaccccaaagcgctgtggtcgagttcccatggt
gccggacgtctactgggtcgagcggaggcgaaacgtgaactcagtctgcacgagttccga
cagtccatggaatccgtcgttgcctgcgtacaggaaagtacccttgatgaggcacccatg
gcctacaagaacattcacgccgtgctggaagcgcaatcagagctcgtggttatccgccat
catgttcaacccctgattaatatcaaaggctga
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