Desulfurispirillum indicum: Selin_2159
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Entry
Selin_2159 CDS
T01383
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
din
Desulfurispirillum indicum
Pathway
din03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
din00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Selin_2159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
din03019
]
Selin_2159
Enzymes [BR:
din01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Selin_2159
Messenger RNA biogenesis [BR:
din03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Selin_2159
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
HI1480
Cas3-like_C_2
UvrD-helicase
AAA_22
Utp25_C
DUF8086
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADU66879
UniProt:
E6W3C5
LinkDB
All DBs
Position
complement(2384872..2386245)
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AA seq
457 aa
AA seq
DB search
MLFSDLGLSAPILRAVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPML
EILERQAIRGRRHVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANL
RRGVDIVVATPGRLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKERQ
NLLFSATFSREITELASSFMKDPVQVEVARRNTAAETVDQVVHLVDRERKRELLSKLISE
GKWQQVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVLVAT
DIAARGLDIDELPHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLVCVDEKQLLKGIEG
LLKRDIPQEHIKGFEPDPSIPAEPIQNGRNNRQGQGRARSGAQPAKSARAFPSTSTGARP
KSAGSRPARQGASAGKQVKFQGASRDGKPRVFDFRSQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgttattttccgatcttggcctttcggccccgattctgcgtgccgttgccgctgaaggc
tacacgcagccaactcctgtccaacaacaggctattcccgccattctgcaaggcagagac
attcaggcgggtgcccagaccggcactggcaaaactgccggcttcaccctgcccatgctg
gaaattctggagcgccaggccattcgtggccgtcgccatgtgcgcgccctcatcctgacg
cccacccgcgaactggcagcccaggtagaggaaagtgtgcgcacctatggcaagcacctc
tccctgaaatccgccgtgatcttcggtggggttgccatgggtccccagctcgccaatctg
cgccgtggcgtggacattgtggttgccactcccggacgcttgctggaccacgttcagcaa
aagagtattgacctgtccaaagtggaattcctcgtactcgatgaggccgaccgcatgctg
gacatgggctttatccacgacatccgcaaggttttggccctgctgcccaaagagcgccag
aacctgctcttctctgccaccttctcccgcgaaatcaccgagctggccagcagcttcatg
aaggatccggtgcaggtggaagtggcccgtcgcaacacggctgctgaaaccgttgaccag
gtggttcacctggtcgaccgcgagcgcaagcgcgagctgctttccaagcttatcagcgag
ggaaaatggcagcaggtgctggtcttcacccgcaccaagcatggcgccaaccgcctggcc
cagcagctggaaaaagacggcattcactccgctgccatccacggcaacaagagccagagt
gctcgcaccaaggcgctggccgacttcaaaaaaggtcaggtcagggtactggtggccacc
gatattgccgcccgtggactggatattgacgagttgccccacgtggtcaactttgaactg
ccaaatgtgcccgaagactacgtgcaccgcatcggccgcaccggccgcgctggcaactgc
ggcaaggcctgctccctggtgtgcgttgatgaaaaacagctgctgaaaggaattgaaggc
ctgctgaagcgtgacattccccaggagcatatcaagggttttgaacccgacccctctatc
ccggctgagcccatccagaatggtcgcaataaccgtcaggggcagggacgggcacgcagt
ggagcgcagcccgcgaaaagcgcccgcgcgttcccctcaacctccacaggcgctcgtccg
aaaagcgcgggcagccgacccgcccgtcagggagcctctgccggcaagcaggtcaaattc
cagggtgcttcccgtgatggcaagcccagggtatttgattttcgttcccagtaa
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