Desemzia incerta: QNK01_03135
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Entry
QNK01_03135 CDS
T09072
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dinc
Desemzia incerta
Pathway
dinc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dinc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QNK01_03135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dinc03021
]
QNK01_03135 (rpoC)
03400 DNA repair and recombination proteins [BR:
dinc03400
]
QNK01_03135 (rpoC)
Enzymes [BR:
dinc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QNK01_03135 (rpoC)
Transcription machinery [BR:
dinc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QNK01_03135 (rpoC)
DNA repair and recombination proteins [BR:
dinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QNK01_03135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WHZ32624
LinkDB
All DBs
Position
complement(616926..620558)
Genome browser
AA seq
1210 aa
AA seq
DB search
MIDVNNFESMQIGLASSDKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPSKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVIEPGNTPLEKKQLLTEREYREKRAQYGNEFNAGMGAEAIKQLLD
DVNIEKEVAELKEDLTTATGQKRTRAIRRLDIMEAFSLSGNDPTWMVMDVVPVIPPEIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKMYQCGLPKE
MAVELFKPFVMKELVERGIANNIKNAKRKIERQDEDIWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCEAYNADFDGDQMAVHVPLSDAAQAEARILMLGAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFSSIEEAEMAYQQGYVHLHSRVGIQ
VSDIKDKPFTEWQRDKVLITTVGKLIFNQIMPVEFPYLNEPTQVNLEVQTPDKYFVEYGT
DIPAFIAEQELVKPFKKKNLGNIIAEVFKRFKVAETSKMLDRMKNLGYKHSTKSGITVGI
ADIAVLREKEEILDDAHKQVEKVTKQFRRGLITDEERYSKVIDIWNAAKDTIQQKLMEVL
DDRNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGQIMELPITSNFREGLSVMEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRETDCHTDRGLVVRAIVNGNEVIEPLE
ERLIGRYTNKSVIHPETGEVIVGRNELITEPLSKVILDAGIEEVTIRSAFTCNTPHGVCK
YCYGRNLATGSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARHPKGRATITEVTGEVISIEDKQAERIKEVTIKGATDTRTYTVPYTSRMQVAEGDIVQ
RGQALIQGSIDPKELIDISDVLTVENYMLAEVQKVYRMQGVEIGDKHIEVMVRQMLRKVR
VLDPGDTDLLPGAKIDIAEFTEENKAVLTTGGLPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKRDPLLGLKENVIIGKIIPAGTGMRKYRKMDPKGIGVVSENVYSIN
DLETETPSEF
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaataattttgaaagtatgcaaataggtttggcttcttctgataaaatc
cgcagttggtcttatggtgaagttaaaaaaccggaaacaatcaattaccggacgctgaaa
cctgaacgtgatggtttattctgcgagcgcatcttcggcccatctaaagactgggaatgt
gcctgtggtaaatacaaacgtatccgttataaaggaatcgtttgtgaccgttgtggtgtt
gaagttactcgttcaaaagtacgtcgtgaacgtatgggacatatcgagttagcagcacca
gtaacacacatttggtactttaaaggtattccaagcagaatgggtcttgttttagacatg
agtcctcgtgctctagaagaggtcatttactttgcttcttatgtcgttattgaaccaggc
aacacaccgcttgaaaagaaacaattgctgactgaaagagaatatcgtgaaaaacgtgct
caatacggcaacgagtttaatgccggaatgggtgctgaagcgatcaaacaattgttagac
gatgtaaacattgaaaaagaagtagctgaattaaaagaagatttaactactgcaactgga
caaaagagaactcgtgcgattcgtcgtttagacatcatggaagctttcagcttatccggt
aacgatcctacatggatggttatggatgttgttccagttatcccgccggaaattcgtccg
atggttcaattggaaggtggacgctttgcaacaagtgatttgaatgacttgtaccgccga
gtgatcaaccgtaacaaccgtttgaaacgtttattagacttaaacgcaccaaacatcatt
gttcaaaatgagaaacgtatgttgcaagaggcagtagatgcgttgatcgataatggtcgt
cgtggccgtccagttactggaccaggtaaccgtccattaaaatcactttctcacatgttg
aaagggaaacaaggtcgtttccgtcaaaacttgctgggtaaacgtgttgactattcaggt
cgttcagttatcgttgttggtccaacattaaaaatgtaccaatgtggattgccgaaagaa
atggctgttgaattgttcaaacctttcgtaatgaaagaattagttgaacgcggaatcgcg
aacaacatcaaaaatgctaaacgtaaaatcgaacgccaagatgaagatatctgggatgta
ttggaagaagttatccgtgaacatccagttctattgaaccgcgcaccgacattgcataga
ttagggattcaagcatttgaaccgatcttagtagaaggtaaagcgattcgtttgcaccca
ttagtgtgtgaagcttataacgccgactttgatggggaccaaatggctgtccacgttcca
ttaagcgacgctgctcaagctgaagcacgtattttaatgttaggtgcacaaaacatcttg
aaccctaaagatggtaaaccagttgttacaccatctcaagatatggttttaggtaactac
tacttgacgatggaagaagcaggtcgtgaaggcgaaggaatggtatttagtagtatcgaa
gaagctgaaatggcttatcaacaaggatatgttcacttgcactctagagtgggtatccaa
gtttctgatattaaagacaaaccatttactgaatggcaacgcgataaagtattgattacc
actgttggtaaattaatctttaaccaaatcatgccagtagaattcccttacttgaacgaa
ccaacacaagtaaacttagaagtccaaacaccagataaatacttcgttgaatatggaaca
gacattccagcatttattgctgaacaagaattagttaaaccgttcaagaagaaaaatctt
ggtaacatcattgctgaagtattcaaacgattcaaagtcgctgaaacttcaaaaatgttg
gacagaatgaaaaacttgggctacaaacattcaactaaatctggtatcacagtaggtatc
gccgatatcgctgtgttaagagaaaaagaagaaattttagatgacgctcataaacaagtt
gagaaagttactaaacagttccgtcgtggtttgatcactgacgaagaacgttactctaaa
gttattgatatctggaatgctgctaaagacactatccaacaaaaactaatggaagtgttg
gacgacagaaaccctatctttatgatgagtgactctggagcccgtggtaacatctccaac
tttactcagttagctggtatgcgtggattgatggctgctccgaacggacaaatcatggaa
ttgccgatcacttcgaacttccgtgaaggtctaagcgttatggaaatgtttatctctacc
catggggctcgtaaaggtatgaccgatacagccttgaagacagccgactctggttacttg
actcgtcgtttagttgacgttgctcaagatgttattattcgtgaaactgactgtcatact
gaccgtggtttagttgttcgcgctattgtgaacggcaacgaagttatcgagcctcttgaa
gagcgtttgattggtcgttacacgaacaaatctgttattcatcctgaaactggtgaagtg
atcgttggaagaaacgaattaatcacagaaccattatcaaaagttattttagatgctggt
atcgaagaagtaacaattcgttctgcatttacatgtaatactcctcatggggtatgtaaa
tactgttacggacgcaacttggctactggtagcgaagttgaagttggagaagcagttgga
acaatcgccgctcaatcaatcggtgagccaggtactcagttaacaatgcgtactttccat
actggtggggttgccggagacgatattactcaaggtcttcctcgtatccaagagatcttc
gaagctcgtcatccaaaaggacgtgcaacaattactgaagttaccggtgaagttatctct
attgaagataaacaagctgagcgtatcaaagaagtaacgatcaaaggtgcaacagataca
cgtacctacactgttccttacacttctcgtatgcaagtagctgaaggagatatcgttcaa
cgtgggcaagccttgattcaaggttctattgatccgaaagaattgatcgacattagtgat
gtattgacggtcgaaaactatatgttagccgaagttcaaaaagtataccgtatgcaaggg
gtagaaattggggacaaacatatcgaagttatggttcgtcaaatgttgcgtaaagttcga
gttcttgatccaggtgatactgatctattgccaggtgcgaaaatcgatatcgctgaattt
acagaggaaaataaagcagtcttaacgactggcggtctgccagctacaagtcgtcctgta
ttgcttggaatcactaaagcatcacttgaaacaaacagtttcttgtctgctgcatcattc
caagaaacaactcgcgtcttgacagatgctgctatccgcggtaaacgtgacccattatta
ggattgaaagaaaatgttatcatcggtaagatcattccagctggtacaggaatgcgtaaa
taccgtaagatggatcctaaaggaattggcgttgtaagcgaaaatgtttacagcatcaat
gatttagaaacagaaactccttcagaattttaa
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