Desemzia incerta: QNK01_05410
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Entry
QNK01_05410 CDS
T09072
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dinc
Desemzia incerta
Pathway
dinc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dinc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QNK01_05410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dinc03019
]
QNK01_05410
03009 Ribosome biogenesis [BR:
dinc03009
]
QNK01_05410
Enzymes [BR:
dinc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QNK01_05410
Messenger RNA biogenesis [BR:
dinc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QNK01_05410
Ribosome biogenesis [BR:
dinc03009
]
Prokaryotic type
rRNA helicases
QNK01_05410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
LidA_Long_CC
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WHZ33025
LinkDB
All DBs
Position
1101491..1103047
Genome browser
AA seq
518 aa
AA seq
DB search
MKFSELGLTPELLKAIERMGFEEATPIQEQTIPLAIEGKDVIGQAQTGTGKTAAFGLPML
QKIDNTNKNVQGLVIAPTRELAIQTQEELFRLSRDKKVKVQVVYGGADISRQIRGLKDGQ
HIVVGTPGRLLDLIKRKVLKLNNVETLVLDEADEMLNMGFIEDIESIIQETPAARQTLLF
SATMPAAIKRIGVKFMKDPEHVQIKTKTLSSALIDQYFVKCKDFEKFDIMTRLFDVQTPE
LSIIFCRTKRRVDEIARGLEMRGYRAEGIHGDLSQQKRMSVLKAFKSGRVDILVATDVAA
RGLDVSGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVSFITPNEMGYLRTIENLTRK
EMTPLRPPSDSEAYKGQIKAAMDQVQELIEKNELERYEKAAHSLLEEFSAEDLAAAFLKS
MIKDSTEIPVKITPERPLPNKSHKGGGGGKGRPRSKGKTYGDRRGAKRPDSRRGSSSSRG
GEKRYNSSDKRQSGSTDKKSSDRRGSGNSKRDFTIRQK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattaggattaacaccagaattgcttaaagcaattgaaagaatggga
tttgaggaagctacacccattcaagaacaaacgattcctttagctattgaaggaaaagat
gttattggacaagctcaaacaggtacaggtaaaactgctgcgtttggtttgccaatgttg
caaaaaatcgacaatacaaacaaaaatgttcaagggttggttattgcaccgactagagaa
ttagctattcaaacacaagaagaattattccgtttgagccgcgataaaaaagttaaagta
caagttgtttacggtggagctgacatcagtcgccaaatccgtggattaaaagacggacaa
cacatcgttgttggtactccaggacgtttactggatttaatcaaacgtaaagtattgaaa
ttaaacaacgtagaaacattggttcttgatgaagcagatgaaatgttaaacatgggattc
attgaagatatcgaaagtatcattcaagaaactccagctgcacgtcaaacattattgttc
tcagcaacaatgccagctgccatcaaacgtatcggcgttaagttcatgaaagatcctgaa
cacgttcaaattaaaacaaaaacattatcaagtgcattgattgatcaatactttgttaaa
tgtaaagatttcgaaaaattcgatatcatgactcgtttattcgatgttcaaacaccagaa
ttgtctatcattttctgtcgtacaaaacgtcgtgttgatgaaatcgccagaggattggaa
atgcgcggataccgtgctgaaggaatccacggtgacctttctcaacaaaaacgtatgagt
gtattaaaagcattcaaatcaggaagagtagacatcttagtcgctactgacgtagcagct
cgtggattagacgtttcaggcgtaactcacgtttataactttgatattcctcaagatcct
gaaagttatgttcaccgtatcggccgtactggtcgtgctggtaaagaaggtatgtctgta
tctttcattacaccaaatgaaatgggatatttacgtacgatcgagaacttaactcgtaaa
gaaatgactcctttacgtccgccttctgattcagaagcgtacaaaggtcaaatcaaagca
gcgatggatcaagttcaagaactgattgaaaaaaatgagttggaacgttatgaaaaagct
gctcatagtttattggaagaattttcagcagaagatttagcagctgctttcttgaagagc
atgattaaagactcaactgaaattccggtaaaaatcactccagaacgtccacttcctaac
aagtcccacaaaggtggcggcggtggaaaaggtcgtcctcgttcgaaaggtaaaacttac
ggagaccgtcgtggcgcaaaacgtcctgacagtcgtcgtggaagcagcagcagccgtggt
ggcgaaaaacgctacaactcttctgataaacgccaaagcggatctactgataaaaaaagc
agtgaccgtcgtggatcaggaaacagcaaacgcgatttcactatccgtcaaaaataa
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