KEGG   Diaphorobacter sp. JS3051: I3K84_06230
Entry
I3K84_06230       CDS       T11034                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dis  Diaphorobacter sp. JS3051
Pathway
dis03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    I3K84_06230 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dis03400]
    I3K84_06230 (ligD)
Enzymes [BR:dis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I3K84_06230 (ligD)
DNA repair and recombination proteins [BR:dis03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I3K84_06230 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QPN32207
UniProt: A0A7T1DWS8
LinkDB
Position
complement(1321144..1323660)
AA seq 838 aa
MPRKDPLAAYKHKRNFAVTPEPADGGAQSQALQYVIQKHWASRLHYDLRLELDGTMKSWA
VPKGPSYDPADKRMAVQVEDHPISYNQFEGQIPPGQYGAGRVIIWDRGYWVPQGNPREDY
RKGKLKFEIHGHKLHGHWTLVRMHGRDDDKQPHWLLIKERDGLERAAGEFSVVDEMPDTV
ADQPPVAPPTRAVAQRAGPAQIQPPTAAAVPWTSAPTAPLPDQLSPQLATLVDGPPADLS
QWLWELKFDGYRMLARVQRDKARLYTRNGNDWTAKMPALAQALAALPLSSAWIDGEVLVL
DAQGVPDFQALQNAFDGRSTDALVFYAFDLPYAHGRDLRQMPLTERRALLRSVLQPASSD
RVRFSESFEARPADLVASACRLGFEGVIGKRKDSVYASRRSTDWIKLKCSHRQEFVIGGY
TDPQGSRTGIGSLLLGVHDEGGALRYAGNVGTGFSERVLADLARRLGALRTQDSPFAQPR
SIPRKVHWVRPTLVAEVSFAEWTKEGKVRHAVFRGLRDDKPAAAIVHEEPAHLQGAAPSR
AARVGGLQVTSPARVVDPSTGFTKLDLVRYYATVAPLMLPHLQGRPVSLLRAPQGLEGEL
FFQKHLDTGALDGVSALSPDLDPGHPPLLEVATAQGLLSAAQMNSVEFHTWNARKDRIER
PNRITFDLDPGEGVPWAHVQEGAALVRLMLTELGLPSFLKTSGGKGLHVVVPIKRLHGWD
AVKDFSQAVVQHLARTLPQRFVAKSGRRNRVGKIFVDYLRNGFGATTACAWTARARPGMG
VSVPVAWQELDALTGGAHWTVQTVDRRLKTGNGPWSGYDEAAVSIGPAIKALGEKRHA
NT seq 2517 nt   +upstreamnt  +downstreamnt
atgccccgcaaagacccgctggcggcgtacaagcataagcgcaactttgccgtgacgcca
gagcccgcggacggcggagcgcagtcgcaggcgctgcagtacgtgatccagaagcactgg
gccagccgcctgcactacgacctgcgcctggaactggacggcaccatgaagagctgggcc
gtacccaagggccccagttacgacccggcggacaaacgcatggccgtgcaggtggaagac
caccccatctcctacaaccagttcgaagggcagatcccgccgggccaatacggcgcgggg
cgggtcatcatctgggaccgcggctattgggtgccgcagggcaatccgcgcgaagactac
cgcaaggggaagctcaagttcgagatccacggacacaagttgcacggccactggaccctg
gtgcgtatgcatggccgagacgacgataagcagccacactggctgctgatcaaggagcgc
gacgggctggagcgcgcggccggggagttcagcgtggtcgacgagatgcccgacaccgtg
gcagaccagccgcccgttgcgccaccgacgcgcgcagtcgcgcagcgggctgggcccgcg
cagattcagcctcccacggcagcggcggtgccgtggacatccgcacccacggcaccgctg
cctgaccagctatccccgcaactcgccacgctggtggatggaccgccggccgacctctcg
cagtggctgtgggagctcaagttcgacggttatcgcatgctggcccgggttcagcgcgac
aaggcacggctgtacacccgtaacggcaacgactggaccgccaagatgcccgccctggcg
caagcgctggccgccttgccgctgtcctctgcatggatcgacggtgaggtgctggtgctg
gacgcccagggtgtccccgacttccaggcgctgcagaacgcgtttgacgggcgttcgacc
gacgcgctggtcttttacgccttcgacttgccttatgcgcacgggcgcgatctgaggcag
atgcccctcactgaacggcgcgcgctgctgcgcagcgtgctgcagccagcctcctcagac
cgtgtgcggttcagcgaatcgttcgaagcccggccggcggacctggtggcctcggcctgc
cggctgggatttgaaggggtgatcggcaagcgcaaggacagcgtgtatgcctcccgccgc
agcacggactggatcaagctcaagtgcagccatcggcaagagttcgtcatcggcggatac
accgacccgcagggctcacgcacagggatcggttcactgctgctgggcgtgcatgacgag
ggcggtgccctgcgctatgccggcaatgtgggcacgggtttcagcgagcgcgtcctcgcg
gacctggcccggcggctgggcgctttgcgcacccaggacagcccgtttgcccagccgcgc
tccatcccccgcaaggtgcattgggtgaggcccacgctggtggcggaggtttccttcgcc
gaatggacgaaagagggcaaggtgcgccacgccgtgttccgcgggttgcgcgacgacaag
cccgccgccgccatcgtccacgaggagcctgcgcacctgcagggggctgcgcccagccgc
gccgcgcgcgtgggggggctgcaggtgacaagcccggcgcgcgtggtggatccctccacg
gggttcaccaagcttgatctggtgcggtactacgccacggtagcgcccctcatgctgccc
cacctgcaggggcggccggtatccctgctgcgggcgccgcaaggtctggagggcgagctt
ttctttcaaaagcacctggacacgggggcattggacggggtgagtgcgctgtcacccgac
ctggatcctggccacccgccgctgctggaagtggccacggcgcagggcctgctgtcggcc
gcgcaaatgaactccgtggagtttcacacctggaatgctcgcaaggaccggatcgagcgg
cccaaccgcatcaccttcgacttggatccgggcgagggcgtgccgtgggcgcacgtgcaa
gagggcgcagcgctcgtgcgcttgatgctcaccgagttgggcctgccatcgttcctcaag
accagcggcggcaagggactgcatgtggtggtgcccatcaagcgactgcacggctgggat
gccgtgaaagacttcagtcaagccgtggtgcagcatctggcgcgcaccctgccgcagcgt
ttcgtggccaagagcgggcgccgcaaccgcgtgggaaagatctttgtggactatctgcgc
aatggctttggcgccaccacggcctgtgcatggacggcgcgcgcgcggccgggcatgggc
gtgtccgtgcccgtcgcctggcaggaactggacgccctcacgggtggcgcccactggacg
gtgcagaccgtggaccggcgcttgaagaccggcaacggcccctggtcaggctatgacgag
gctgccgtgtccatcgggccggcgatcaaggcgcttggggaaaaacgccacgcatag

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