Diaphorobacter sp. JS3051: I3K84_06570
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Entry
I3K84_06570 CDS
T11034
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dis Diaphorobacter sp. JS3051
Pathway
dis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I3K84_06570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dis03019
]
I3K84_06570
Enzymes [BR:
dis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I3K84_06570
Messenger RNA biogenesis [BR:
dis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I3K84_06570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QPN32270
LinkDB
All DBs
Position
1392177..1393919
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AA seq
580 aa
AA seq
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MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ
IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP
QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLH
IIQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMM
EIERFTKQEIPVQVIDGFGPDEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARQEM
MERIRTNKAATGGQRGSRQGGGQGEGQQRAGGQNGSGGRGGNAGNAGRTAGPRDQQRPQN
TAGGRRRGGPAGAGNGGGNGGNGGNRRFDDSQPRSENAHLGTQLGNIGIGPRHGSGRASQ
PDPMRTSVDSMADRGRRGGFGRGNGGGGGGRGPRGGGFGR
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaagctggcgccggccattttgcgggccgtgcaagaacaaggc
tacgacaacccgacccctatccaggcccaggccatcccagccgtcctcgctggacacgac
cttctcgccggcgcacagaccggcaccggcaagaccgccgcgttcacgctgcccatgctg
caccgcctggccgaaggccaagccccacgcagccagtttggcggcaagggtgtgcgcgcc
ctggtgctcacgcccacgcgggagctggcagcgcaggtcgaagaatccgtgcgcggctac
ggcaaatacctggatctgaactccactgtgatcttcggcggcgtcggtatgaacccgcag
atcgaacgcatcaagcgcggcgtggacgtgctggtggctacccctggccgcctgctggac
ctgcagcagcaaggcttcatggacctgtccaccgtcgagatcctggtgttggacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtgctggcgctgctgccc
cagtccaagcaaagcctgctgttctcggccacgttcagcgacgacatccgtgaactggcc
aactcactgctcaagaacccgcagagcatccaggtcaccccgcgcaacaccacggtgcaa
cgcatcagccaggtgatccaccccgtggggcgcggcaagaagaagcaggtgctgctgcac
atcatccaggagcacgactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaacgtggccgagtacctgaccaagaacggcgtttcggccatggcgctgcatggcaac
aagagccagagcgcccgcacccaggcgctggagggcttcaagacgggccagatccgtgcc
ctggtggctaccgacatcgcggcacgcggcatcgacatcgacgacctgccgcacgtcgtg
aactacgaaatccccaacgtgcccgaggactatgtgcaccgcatcggccgcacgggccgc
gccggccgcgagggccatgccgtgagcctcgtctgcatggacgaggaaggtttcatgatg
gagatcgagcgcttcaccaagcaggaaatccccgtgcaggtgatcgacggctttggcccg
gacgagggagagaaggccgagcccatcgccatgggccgccagaccatctggggcggcgcg
ggcaagccgcccagccgcgaagtcatgcaggcagcggccaaggcggcacgccaggagatg
atggagcgcatccgcaccaacaaggcggccactggcggccagcgcggttcgcgccaaggc
ggtggccagggcgaaggccagcagcgcgccgggggtcagaacggcagcgggggccgcggc
ggcaacgcaggcaatgcaggccgtactgccggtccacgtgatcagcaacgtccgcagaac
acggccggtggccgccgccgcggcggtcccgctggtgcaggcaatggcgggggtaatggc
ggtaatggcggaaatcgccgtttcgacgacagccagcctcgcagcgagaacgctcacctg
ggcacgcagctcggcaacattggcatcggcccacgccatggcagcggccgtgccagccag
ccggaccccatgcgcaccagcgtggacagcatggcggaccgcgggcgtcggggcggcttc
ggccgtggcaacggcggcggcggtggtggccgcggcccacgcggcggcggcttcggccgc
tga
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