Diaphorobacter sp. JS3051: I3K84_19865
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Entry
I3K84_19865 CDS
T11034
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dis Diaphorobacter sp. JS3051
Pathway
dis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I3K84_19865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dis03400
]
I3K84_19865 (mfd)
Enzymes [BR:
dis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I3K84_19865 (mfd)
DNA repair and recombination proteins [BR:
dis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I3K84_19865 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QPN30969
UniProt:
A0A7T1DUM3
LinkDB
All DBs
Position
complement(4161342..4164839)
Genome browser
AA seq
1165 aa
AA seq
DB search
MQLPKLSPGKRFTLPRPVGSADALLLARLGEREKAAGRTTAIVTADATDAQRLIDEMAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRIQQRDKDTGADVVLVPATTALYRL
APPSFLAGYTFHFKVKQKLDEAKLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMGSA
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAARAKFRQRWRELLEG
DPTRSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGNEATVVLHGDLETAFQRFWQD
TRDRYRLIQGDPDHPTLPPEALFLSAEQFYGQAKPHAQLSLRPGVEDVADNAQFQKLPDL
SVVRGADDPLARLQAHIRATQTTGQRVLLLAESDGRRESLLDFLRASGLNPPAFDSLAEF
QSTPEERVGIATAALASGFAWMEEGLDLVTETELFAAGSTTRRRKKQEQASDVEALIKDL
SELKVGDPVVHNQHGIGRYRGLIHMDVGNKNPDGSPALQEFLHLEYADKAVLYVPVSQLQ
LIGRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAAREGHAFRYSP
NDYEQFANDFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVA
GGKQVAFLAPTTLLAEQHYRTLSDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIV
VGTHKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMAL
EGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQ
KLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIIISR
ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLDAIQQMEELGSGFYLAM
HDLEIRGAGEVLGESQSGNMMEIGFQLYNEMLAEAVKQLKAGKEPDLLAPMQAATDINLH
APALLPDDYCGDVHLRLSFYKKLATAKTSDQIDALLEEIVDRFGKLPPQAQTLIDVHRLR
VLSAPYGVVKVDAAPGVITITFKPQPPVDPMAIIHLIQKNRHIKLAGNEKLRIERELPEP
VARAQMVRDVLRSLGQPLVAEAVSA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgcccaaactctcccccggaaaacgattcaccctgccccgccccgtgggcagc
gccgacgccttgctgctggcccgcctgggcgagcgggaaaaggccgcaggccgcaccacc
gccatcgtcaccgccgatgcaaccgacgcccagcgcctcatcgacgagatggccttcttc
gcgcccgagttgcgctgcgcgctgtttcccgactgggaaacactgccctacgacagcttc
tcgccgcaccaggacctgatcagcgagcggctggccacactctggcgcatccagcagcgc
gacaaggacacgggcgccgacgtggtgctggtgccggccaccacggcgctgtaccggctg
gcgccgccgtcgttcctcgcgggctacaccttccatttcaaggtgaagcagaagctggac
gaggccaagctgcgcgcccagctcacgctcgcgggctaccagcatgtgtcccaggtggtg
ggccatggcgaatacgcggtgcgcggcgggttgatcgacctgttcccgatgggctcggcc
gtgccgtaccgggtggacctgttcgacgacgagatcgactccatccgcacgttcgacccc
gacagccagcgcagcctctacccggtgcccgaggtgcgcctgctgcccgggcgcgagttc
cccatggacgacgcggcgcgcgccaagttccgccagcgctggcgcgagctgctggagggc
gatcccacgaggagccgcatctacaaggacatgggcaacggcgtggccacggccggcatc
gagtactacctgccgctgttcttcgacgagacggccaccgtgttcgattacctgggcaac
gaagccaccgtggtgctgcacggcgacctggagacggccttccagcgcttctggcaggac
acgcgcgatcgctaccgcctgatccagggcgacccggaccaccccaccctgccgcccgag
gcgctgtttctgtcggccgagcagttctacggccaggccaagccgcacgcccagctgtcg
ctgcgcccgggcgtggaagacgtggccgacaacgcgcagtttcagaagctgcccgacctg
tccgtggtgcgcggcgccgacgatccgctggcacggctgcaggcccacatccgcgccaca
cagaccacgggccagcgcgtgctactgctggccgagagcgacggccggcgcgagagcctg
ctggattttctgcgcgcctcgggcctgaacccgccggccttcgactcgctggctgagttc
cagtccacgcccgaggaacgtgtgggcatcgccacggcggcgctggcctcgggcttcgcg
tggatggaagaaggcctggacctggtcaccgagaccgaactgttcgccgccggctccacc
acgcgccggcgcaagaagcaggagcaggccagcgacgtcgaagcgctgatcaaggacttg
tccgagctgaaggtgggcgacccggtggtgcacaaccagcacggcatcgggcgctaccgc
ggcctcatccacatggatgtgggcaacaagaaccccgacggcagccccgcgctgcaggag
ttcctgcacctggaatacgccgacaaggccgtgctctacgtgcccgtgagtcagctgcag
cttatcggccgctacacgggcgtgtctgccgacgaggccccgctgcacaagctgggcagc
ggccagtgggaaaaagccaagcgcaaggccgccgagcaggtgcgcgacgccgcggccgag
ctgctcaacatctacgcccgccgcgccgcgcgcgaggggcatgccttccgctactcgccc
aacgactacgagcagttcgccaacgacttcggcttcgaggagaccgcggaccagaaggcc
gcgatccacgccgtggtgcaggacatgatcagcccgcgccccatggaccggctggtctgc
ggcgacgtcggctttggcaagaccgaggtcgcactgcgcgcctgtttcgtggccgtggcc
gggggcaagcaggtggcgttcctggcgcccaccacgctgctggccgagcagcactaccgc
acgctgagcgaccgcttcagcaagtggcccgtgaaggtggccgaggtctcgcgctttcgc
tcgggcaaggagatcaccgccgccgtgaagggcattgccgacggcacggtggacatcgtg
gtgggcacgcacaagctgctcagcgaatcgacccagttcaagaacctgggcctgctcatc
atcgacgaagaacaccgcttcggcgtgcgccacaaggaggcgatgaagcagttccgcgcc
gaggtggatgtgctcacgctcaccgccacgccgatcccgcgcaccatgggcatggcgctg
gaggggctgcgggacctgtccgtgatcgccaccgcgccgcagcggcgcctggccatcaag
accttcgtgcgcaacgaaggcacgggcgtgatccgcgaggccgtgctgcgcgagctcaag
cgcggcggccagtgctacttcctgcacaacgaggtcgagaccatcgagaaccggcgccag
aagctcgaagagatattgcccgaggcgcgcatcgccgtggcccacggccagatgcccgag
cgcgagctggagcgcgtgatgcgcgacttcgtggcccagcgctacaacatcctgctgtgc
tcgaccatcatcgagaccggcatcgacgtgcccacggccaacaccatcatcatcagccgc
gccgacaagttcggcctggcgcagctgcaccaattgcgcgggcgcgtgggccgcagccac
caccaggcctacgcctacctgatggtgcccgacatcgacggcctgaccaagcaggcgcag
cagcgcctggacgccatccagcagatggaggagctgggcagcggcttctacctggccatg
cacgacctggagatccgcggcgcgggcgaggtgctgggcgagagccagagcggcaacatg
atggagatcggcttccagctctacaacgagatgctggccgaggcggtgaagcaactcaag
gccggcaaggaacccgacctgctcgcccccatgcaggccgccaccgacatcaacctgcac
gcccccgccctgctgcccgacgactactgcggcgacgtgcacctgcgcctgtcgttttat
aaaaagctggccacggctaagaccagcgaccagatcgacgcgctgctggaagaaatcgtg
gaccgcttcggcaagctgccgccgcaggcgcaaacgctgatcgacgtgcaccgcctgcgc
gtgctgtccgcgccctacggcgtggtgaaggtggacgcggcgccgggcgtcatcaccatc
accttcaagccgcagccgccggtggaccccatggccatcatccatctgatccagaagaac
aggcacatcaagctggccggcaacgagaagctgcgcatcgagcgtgaactgcccgagcca
gtcgcccgcgcccagatggtgcgcgacgtgctgcgcagcctgggccagccgctggtggcc
gaggcggtcagcgcgtga
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