Dietzia sp. oral taxon 368: C3V38_14720
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Entry
C3V38_14720 CDS
T05390
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dit
Dietzia sp. oral taxon 368
Pathway
dit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V38_14720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dit03019
]
C3V38_14720
Messenger RNA biogenesis [BR:
dit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3V38_14720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AVM65441
UniProt:
A0A2S0LYV0
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All DBs
Position
complement(3150422..3152659)
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AA seq
745 aa
AA seq
DB search
MTESPSTGRGRGRTRRAAGRPSGEPAPATAIQFTEPTPVADAPAAESAPPRAGRGTTTQD
KAPQNKGAQDQNQDDKGQQSRGQRGGRQNKTDQDKGEQGRTQQDSSKGGSRGRGRGTGST
GQDGNDQKAGGQNGGGQKNGGGQESGGQNGGRGRGGRNRGRGRGDTSTAEFGGVKTMQGG
DMTVRMPRPPKPRKGALRIVALGGISEIGRNMTVFEYDSKLLIVDCGVLFPSSTEPGVDL
ILPDFGHIEDRLDQVEALVLTHAHEDHIGAIPFLLKLRPDIPVVGSRFTLALVAAKCQEH
RIKPVFRTVDESSVSDFGKFQVRYFDVNHSIPECLGVVIKAGDNTVMMSGDIKLDQLPTD
KRPTDLPKMSRFGDEGVDLLLLDSTNATTPGISPSESGVRPALQRLIADARQLVVVACFA
SNVYRVQSVVDAAAATGRKVALTGRSMLRNMEIALEMGLLTDPDRVLVDMDTAAKLPSEK
VLVMTTGTQGEAMAGLSRMARREHRQINLSEGDTVLFSSSIVPGNEESVFGVQNGLSQMG
VNVVTSREADIHVSGHGYSGELLFIYNAVRPKNAMPVHGEWRHLRANKALAIATGVAEEN
VVLAQNGVVVDLVDGKASVVGQVPVGNLYVDGLSTGDIGDTVLADRTALSEEGFIVATVV
VDPRTGRPVSKPQIIGKGFTDEPGALAPVVELVENALWDLAGEGETDPYRIAQAVRRTVG
RWVSEKWRRKPMIVPTVITSAVAEV
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgacggagagtccctccaccggccgcggacgcggccgtacccgccgcgccgccggccgt
ccctcgggcgagccggcacccgccacggccattcagttcaccgaaccgaccccggtcgcc
gacgcgccggccgccgagtcagcgccgccccgcgccggtcgcggcacgacgacgcaggac
aaagccccgcagaacaagggcgcgcaggaccagaatcaggacgacaagggtcagcagagc
cggggccagcgaggcggtcggcagaacaagacggaccaggacaagggagagcagggcagg
acccagcaggactcgtccaagggcggctcgcgaggtcgcgggcgcggtaccggctcgacc
ggccaggacggcaacgatcagaaggccggcggccagaacggcggcgggcagaagaacggc
ggcgggcaggaatccggcggccagaacggcggacgtggccgcggcggccgcaaccggggc
cgcggacgcggcgacacgtcgacggccgagttcggcggggtcaagaccatgcagggcggc
gacatgaccgtgcgcatgccccgcccgcccaagccccggaagggcgccctgcggatcgtc
gcgctcggcggcatctccgagatcggccgcaacatgacggtcttcgagtacgactcgaag
ctgctgatcgtggactgcggcgtgctgttccccagctccacggagccgggcgtggatctc
atcctgcccgacttcggacacatcgaggaccgcctggaccaggtcgaggcgctcgtgctc
acccacgcccacgaggaccacatcggggcgattccgttcctgctcaagctgcgccccgac
atccccgtggtggggtccaggttcaccctcgcgctggtggcggccaagtgccaggagcac
cgcatcaagccggtgttccgcacggtcgacgagtccagcgtcagtgacttcggcaagttc
caggtccgctacttcgacgtcaatcactcgatccccgagtgcctgggcgtggtcatcaag
gccggcgacaacacggtgatgatgtccggcgacatcaagctcgaccagctccccaccgac
aaacgcccaaccgacctgcccaagatgtcgaggttcggcgacgagggtgtcgacctgttg
ctcctggactccacgaacgccaccacgccgggcatcagcccgtcggagtccggcgtccgg
cccgccctgcagcggctcatcgccgacgcgcgtcagctcgtggtggtggcctgcttcgcc
tccaacgtctaccgcgtccagtccgtcgtcgacgcggccgccgccaccgggcgcaaggtc
gccctgaccggacggtcgatgctccgcaacatggagatcgcgctcgagatggggctcctc
acggatccggacagggttctggtggatatggacaccgccgccaaactgccctccgagaag
gtcctcgtgatgaccaccggtacacagggcgaggccatggccggtctctcccggatggcc
cgccgcgagcaccggcagatcaacctctccgagggcgacacggtgctgttctcctcgtcg
atcgtcccgggcaacgaggagtccgtcttcggcgtccagaacggcctgtcgcagatgggc
gtgaacgtggtcaccagtcgtgaggcggacatccacgtgtccggccacgggtactccggc
gaactactgttcatctacaacgccgtgcgcccgaagaacgccatgcccgtgcacggcgag
tggcgtcacctgcgggccaacaaggcgctggcgatcgccaccggggtggccgaggagaat
gtcgtcctcgctcagaacggcgttgtggtggacctcgtcgacggcaaggcctccgtggtg
ggccaggtgccggtcggcaacctgtatgtcgacggcctgtccacgggcgacatcggtgac
accgtgctggcggatcgcacggccctgagcgaggagggcttcatcgtcgccaccgtcgtg
gtggacccgcgcacgggtcggccagtgagcaaaccgcagatcatcggcaagggtttcacc
gacgagccgggcgcgctggccccggtggtcgaactggtggagaacgcgttgtgggatctc
gccggggagggggagacggatccgtaccgaatcgcccaggccgtccgtcgcaccgtgggt
cgctgggtgtcggagaagtggcgccgcaagcccatgatcgtgcccaccgtgatcacctcc
gccgtcgccgaggtctga
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