Dietzia sp. oral taxon 368: C3V38_15560
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Entry
C3V38_15560 CDS
T05390
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dit
Dietzia sp. oral taxon 368
Pathway
dit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V38_15560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dit03021
]
C3V38_15560
03019 Messenger RNA biogenesis [BR:
dit03019
]
C3V38_15560
Transcription machinery [BR:
dit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C3V38_15560
Messenger RNA biogenesis [BR:
dit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C3V38_15560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
SAP
Motif
Other DBs
NCBI-ProteinID:
AVM65581
LinkDB
All DBs
Position
complement(3322592..3324652)
Genome browser
AA seq
686 aa
AA seq
DB search
MTSTDTTSTPPQGAALSAMRLPELKALAQQMGLKGLSGKRKGDLVAMIEGARGGRPAQSD
APRRAETPRQADTPRQAETPREAEATSRADAPQQADAPRREDAHARSESPSADGPAPSTG
TGRRGRGNRADDAGEKTRDGADGGESAPAGDEGGSPGDGRAQGERSRREDGNRGGQRQGR
GHQNRDQDSRDQQGGRNDRGSQGGRNNQGGRNDQDGQGSRNDQGGQGSRNDQGGQDGGEN
GPRGDGQNRDDDGGGRGRRGRRRRERNRGGNRPAEGETEVREDDVLQPVAGILDVLDNYA
FVRTSGYLAGNNDVYVSMNMIRRYGLRRGDAITGAVKMPRDGQSDGQHDGPGGGQGGGRG
GGQGGKNRAKFNPIARIDTVNGSPADQARQRPEFSKLTPLYPNQRLRLETEKNIISTRVI
DLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECHLMVVLVDERPEEVTDMQRS
VKGEVIASTFDRPPSDHTQVAELAIERAKRLVELGQDVVVLLDSITRLGRAYNNSSPASG
RILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTGNAE
LKLDRRIAERRVFPAVDVGPSGTRKEELLMSPEEAGIMHKLRRVLSGLDTHQAIDLLMSQ
LRKTNTNYEFLLQVAKTTPTLPQDEE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgacggacaccacttccacccctccccagggtgccgcgctgtcggcgatgcga
ctgcccgagctcaaggcactggcgcagcagatgggcctcaagggcctgtcgggtaagcgc
aagggcgacctcgtcgcgatgatcgaaggcgcgcggggcggccgccccgctcagtccgac
gcaccgcgccgcgccgagaccccgcgccaggctgataccccgcgtcaggcggagaccccg
cgcgaggcagaagccacgagccgggcggacgcaccgcaacaggcggacgcgccccgccgc
gaggatgcgcacgcgcggtccgagtccccctcggccgatgggccggcaccgtcgacgggt
acgggtcgccgcggacgcggcaaccgggcggacgacgcgggggagaagacgcgcgacggc
gccgacggcggcgagtccgcaccggcgggcgacgagggcggctccccgggcgacggacgc
gcccagggcgagcggtcgcgccgcgaggacggcaaccgcggtggccagcggcaggggcgc
ggtcatcagaaccgcgaccaggactcccgggaccagcagggcggccgcaatgaccgcggc
agccagggcggccggaacaaccagggtggccgcaacgatcaggacggccagggtagccgg
aacgaccagggcggccagggtagccggaacgaccagggcggccaggacggcggcgagaac
ggcccccgtggcgacggccagaaccgcgacgacgacggcgggggccgcggtcgtcgtggt
cgccggcgtcgcgagcgcaatcgtggcggcaaccgcccggccgagggtgagaccgaggtg
cgggaggacgacgtcctccagccggtcgccggcattctcgacgtcctcgacaattacgcg
ttcgtgcgcacctccggctacctcgccggcaacaacgacgtctacgtgtcgatgaacatg
atccgtcgttacggcctgcgtcgcggtgacgcgatcaccggcgcggtcaagatgccccgc
gacgggcagtccgacggacagcacgacggtccgggcggtggccagggtggcggccgcggt
ggcggacagggtgggaagaaccgagcgaagttcaatccgatcgcccgcatcgacacggtc
aacggcagcccggcggaccaggcccgccagcgtccggagttctccaagctcaccccgctg
taccccaaccagcggctgcggctcgagacggagaagaacatcatctccacccgcgtgatc
gatctgatcatgccgatcggcaaggggcagcgcgccctcatcgtgtcgccgccgaaggcc
ggtaagaccacgatcctgcagaacatcgccaacgcgatcgccacgaacaaccctgaatgc
cacctgatggtcgtcctcgtagacgagcgaccggaggaggtcaccgacatgcagaggtcg
gtcaagggcgaggtcatcgcctcgaccttcgaccgtccgccgtccgaccacacgcaggtc
gccgagctcgcgatcgagcgtgcgaagcggctggtggagctgggtcaggacgtcgtcgtc
ctcctcgactcgatcacgcgtctcggccgcgcctataacaactcgtccccggcctcgggg
cgcatcctgtccggtggtgtcgactcgaccgccctgtacccgcccaagcggttcctcggc
gcggcacgcaacatcgagaacggcgggtccctgacgatcatcgcgaccgcgatggtcgag
accggctcggccggtgacaccgtgatcttcgaggagttcaagggcaccggcaacgccgag
ctcaagctggaccgtcggatcgccgagcgccgggtcttcccggccgtcgacgtcggccct
tcgggtacccgcaaggaggagctgctcatgagccccgaggaggcgggcatcatgcacaag
ctccgccgggtgctctcgggtctggacacccaccaggccatcgacctgctcatgtcgcag
ctgcgcaagaccaacaccaactacgagttcctgttgcaggtggccaagacgacgcccacg
ctgccgcaggacgaggagtga
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