Dietzia sp. oral taxon 368: C3V38_16550
Help
Entry
C3V38_16550 CDS
T05390
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dit
Dietzia sp. oral taxon 368
Pathway
dit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V38_16550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dit03019
]
C3V38_16550
03016 Transfer RNA biogenesis [BR:
dit03016
]
C3V38_16550
Enzymes [BR:
dit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C3V38_16550
Messenger RNA biogenesis [BR:
dit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3V38_16550
Transfer RNA biogenesis [BR:
dit03016
]
Prokaryotic type
tRNA degradation factors
C3V38_16550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
Motif
Other DBs
NCBI-ProteinID:
AVM66165
LinkDB
All DBs
Position
unnamed1:107657..110284
Genome browser
AA seq
875 aa
AA seq
DB search
MHRHLGRTPLRSRRVTEVGLAPPRRPGRVARSCRMTALMIDGAGSLDRDDAVTVTERGDG
WDATVYVAAVADVVPLGSPADRSALARVHTRYRRSGVKPMLGRELEDAATLSSTQPRPVV
AIGMRFTNDGSLTASSISRDLLPAGAAIAYTHQQVGAALSPNSTDPQRAQLSAAYRLART
LIAARRAAGAFAVFDAARGMVTSEEGQLVAMQSGQTPAAYLIVQELMVAANATLARWAIE
LELPILFRNHVRSAVAPPADALLADVAAELSASPVMTPDALQALTARVNQTLRPATYQPV
AIGHFGLQIPAYAHATSPLRRYADLVTQRQVLAQLDGLEPPYAPSVLDDIAEAINSTLRD
RAQQISATASATRRKQAATTIASGDYTHTHGRDWLRVLRIAADTALPPSLATEVRRRADA
GELDGGQLAVMMRATGHGWPGLLEQVIAAARRVTPHAAASTISAWHQAEDDDRPAPQAEY
RQDGPPHDPTFTARVTFAGVASSWTSAASKKLAEREALWEIVEVLAGVRDAPTPADPPQV
GDTGLARQPADQATPEGAPVELETLSGKGWLRAARALISDPAGREDELARELRRRADDGT
LEPPVVAALLADDSGRWWPLLGELVATMRTTAPHAANSTLSAWQQLRGAPVGSPDLEVRQ
FGTPHAPLFAIRARLQQWLTSWQCGHAKKAAATQQALWDLVDVIAGNAPPGAVDDAPTAP
ELEAAADRENGKTIALAHLKRGTGRAAVPPHAEGPLMSSPAEVTASAPPLAHTEVPAQVR
EHAALVAALGGTPTERAKKYRNAVKSPTAWINNLAAVLHSDAPEVDTTSIEGGYTATITI
NTPVGAVVGSGAGTNQKTARAVASLGIVLHLFSLT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcaccggcatctgggccgaacgccgcttcggtcgcggcgcgtaacggaagtcgggctc
gcgccaccacgccgaccaggacgggtggcacgatcctgtcgcatgaccgcattgatgatc
gacggtgccggcagcctcgaccgcgacgacgcggtgacggtgacggagcgcggagacggc
tgggatgcaaccgtgtacgtggccgccgtcgccgatgtcgtccccctcgggtcgccagca
gatcggtcagccttggcccgggtgcacacccgctaccggcgcagcggagtgaaacccatg
ctcggacgagaactcgaggacgcagccacactgtcgtccacccagccgcggcccgtggtg
gccatcggcatgcggttcaccaacgacggcagcctgaccgcgtcgtccatctcccgcgac
ctgctgcccgccggcgccgcaatcgcctacacgcaccagcaggtgggggccgccctctcc
ccgaactcaaccgatccgcagcgtgcccaactcagtgccgcgtaccggctggccaggacg
ctaatagccgcccggcgggcggccggggcattcgcagtcttcgacgcagctcgcggcatg
gtcaccagcgaagaaggccagctggtggccatgcagtccggtcagactccggccgcctac
ctgatcgtccaagagctgatggtggccgcgaacgcgacgctcgcacggtgggccatcgaa
ctggaactgccgatcctgttccgcaatcacgtccgatcggccgtcgccccgcccgcggac
gccctgctcgccgacgtcgccgctgaactgtccgcctcaccggtgatgacgccagacgcc
ctgcaggccctcaccgcccgggtcaatcagacgcttcgcccggcgacgtaccaaccggtg
gccatcggtcacttcggcctgcagattcccgcctacgctcacgccacatccccgctgcgc
cgctacgccgacctcgtcacccagcgtcaggtcctggcccagctcgacggtctggagccg
ccgtacgccccgtcagtgctcgacgacatcgccgaggccatcaacagcaccctgcgcgac
cgggcccagcagatttcagcgacggcgtcggcaacacgccgcaagcaagcggccaccacc
atcgcctccggcgactacacgcacacgcacggccgcgactggctgcgcgtactgaggatc
gccgccgacacagccctgcctccctcgctcgcgacagaggtgcgccggcgggccgacgcc
ggcgaactggacggcgggcagctggccgtgatgatgcgggcgaccgggcatgggtggccg
ggactgctcgagcaggtgatcgccgccgcgcgccgggtcacaccgcatgccgcagcctcg
acgatttccgcctggcaccaagccgaggacgacgaccggcccgcgccgcaggccgagtac
cggcaggacgggccgccgcacgacccaaccttcactgcacgggtgacgttcgctggggtc
gcctcctcgtggacgtccgcggcgtcgaagaaactggcagagagggaggccctgtgggag
atcgttgaagtgctggccggcgtgagggacgccccgacgccggcagacccgccccaggtg
ggcgacaccggcctcgcccggcagccggcagaccaggcaaccccagagggggcgccggtg
gagctggagacactgtccggcaagggctggcttcgggccgcgcgggccttgatctccgac
ccggccggccgagaagacgagctggcccgcgagctgcggcgccgcgccgacgacggcacc
ctggagcccccagtggtggcagccctgctggcagacgactcaggcaggtggtggccgctg
ctgggggagctggtggccacgatgcgcaccacggcaccgcacgccgccaattcgaccctg
tcggcgtggcagcaactacgcggcgccccggttggctccccagatctggaggtgcgccag
ttcggcacgccgcatgccccgttgttcgccatccgcgcccgactccagcagtggttgacc
tcgtggcagtgcggccacgccaagaaggcggcggcgactcagcaggcgctatgggacctc
gtggacgtgatcgcaggcaacgcccctcccggggccgtcgacgacgcaccgactgccccc
gagctcgaggccgccgccgacagggaaaacggcaagacgatcgccctggcccacctcaag
agggggaccggacgggcagcagttccgcctcacgccgaagggccgctgatgtcatcgccc
gccgaggtcacagccagcgccccgccgctggcccacaccgaggtgcccgcccaggtgcgc
gaacacgctgccctggtagcggccctgggaggcacacccaccgaaagggccaagaagtac
cgcaatgccgtgaaatcgccgaccgcctggatcaacaacctggcagcagtcctgcacagc
gacgccccggaggtggacaccaccagcatcgagggcggctacacagccacgatcacgatc
aacaccccggtaggggcagtcgtcggcagtggggccggcaccaaccagaagaccgcccgc
gcagtcgcttcgctggggatcgtgctccacctgttctccctgacctaa
DBGET
integrated database retrieval system
