Dialister sp. UW_FK_DIAL1_1: ACFWUL_09120
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Entry
ACFWUL_09120 CDS
T11244
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
diu Dialister sp. UW_FK_DIAL1_1
Pathway
diu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
diu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFWUL_09120 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
diu03019
]
ACFWUL_09120 (cshA)
03009 Ribosome biogenesis [BR:
diu03009
]
ACFWUL_09120 (cshA)
Enzymes [BR:
diu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACFWUL_09120 (cshA)
Messenger RNA biogenesis [BR:
diu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACFWUL_09120 (cshA)
Ribosome biogenesis [BR:
diu03009
]
Prokaryotic type
rRNA helicases
ACFWUL_09120 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XOQ32685
LinkDB
All DBs
Position
complement(2237113..2238630)
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AA seq
505 aa
AA seq
DB search
MYETFNELGVVPEILKAVEDMGFEEPTPIQKASIPVAMAGKDLIGQAQTGTGKTAAFGIP
ILERIDTSKPGPQAVVLSPTRELAIQSAEEINHLAQYLPVHALPIYGGQDIERQFKALRK
HPNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAAIPEERQTM
FFSATMPEPIRELAETFLKDPELVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLDMQD
PELAIVFVRTKRRCDEVTEALKKRGYMAEGLHGDLSQPKRDTVVRQFKEGTIDILVATDV
AARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQLRDIERVI
RRRIKRRAVPTLSEVIEGNQKAAIESLSDTAQGGGLEDYRESAEDLLNDVDSVSLVAAAI
KLLTKQPDVTPVKITEELPNFKRRRNGQRRHFDGDRPRRRFNKDEGGRHFDGKRSRRFDN
RNRKPRGNGDKNIHESNFKPYFKED
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaaacttttaacgaactgggagttgtgccggaaatactgaaggccgtggaggat
atgggattcgaagaacccacgcccatccagaaggcatcgattccggtagcaatggccggg
aaggacctcatcggccaggcccagacggggaccgggaagaccgcagcctttggtattccc
atcctggaacggattgatacatccaagccgggaccccaggcagtggttctttccccgacc
cgggaactggccatccagtctgccgaagaaatcaaccatctggcccagtaccttccggtc
catgcactgcccatttacgggggccaggacattgagcgccagttcaaggcactccggaaa
catccgaacatcatcgtagccacaccgggccggctcatggaccacatgaagcggggcacc
attgacctgtcccatgtgcagattctcgtcctcgatgaaggggatgaaatggtggatatg
ggattcatcgatgatatccgcaccatcctggcggccattccggaagaacggcagaccatg
ttcttctccgccaccatgcccgaacctatccgggaactggcggaaacgttcctgaaggat
ccggaactggtgaagatcaaagcggccaccgtgaccatcgacctcattgagcaggaatat
atcgaactgccggaccggcagaagtttgacgccctctgccgtctcctggatatgcaggac
ccggaactggccatcgttttcgtccgcacgaaacggcgctgcgacgaagtgacggaggcc
ctgaagaagagaggatacatggcggaaggacttcatggcgacctgtcccagccgaagaga
gataccgtggtgcgccagttcaaagaagggaccattgatatcctggtggctacggacgtg
gcagccaggggcctcgatatttctggcgtcacccatgtatacaacttcgatatgccccag
gacccggaaatctatgtacaccgggtaggccgtaccggccgtgcagggaagacgggcctt
gccaccaccttcgtcatttcccgggaaatgggacagctccgggatattgaacgggtcatc
cgccgccgtatcaagaggcgggctgtaccgaccctgtccgaagtcatcgaaggaaaccag
aaggcagccattgaaagcctttccgataccgcccagggcggaggcctcgaagattacagg
gaaagcgcggaggatctcctgaacgatgtggactccgtctccctggtagcagcggccatt
aagcttctgaccaagcagcccgacgtgacaccggtaaagattacggaagaactgccgaac
ttcaagcgccgcaggaacggccagcgccgccacttcgacggggaccggccaagacgccgg
ttcaataaggacgaagggggccgccatttcgatggcaaacggtcccgtcgttttgacaac
agaaaccggaaaccgagaggtaatggggataagaatattcatgaatccaatttcaagccc
tacttcaaggaagactga
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