Dietzia sp. JS16-p6b: CT688_02885
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Entry
CT688_02885 CDS
T05397
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
diz
Dietzia sp. JS16-p6b
Brite
KEGG Orthology (KO) [BR:
diz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
diz03019
]
CT688_02885 (hrpB)
Enzymes [BR:
diz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CT688_02885 (hrpB)
Messenger RNA biogenesis [BR:
diz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CT688_02885 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
ParA
AAA_19
AAA_11
AAA_22
NTPase_1
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AVZ38581
LinkDB
All DBs
Position
complement(635440..638025)
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AA seq
861 aa
AA seq
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MSPFDLDRIGRGLPFTDALPALRRALATAGTAVVQAPPGTGKTTLAPPAVASADGIAGRV
VVTQPRRVAARSAARRLAALTGTEVGSLAGYSVRGDTRVGRDTLVEFVTPGVLVRRLIAD
PDLTGAGAVVLDEIHERDVESDLALALLCEVRQLRDDLPVVAMSATLDSGRIARLLGGAG
AGGAGAGATGAAPVIELPAVLHPLDIRYRPSPVPRLDARGVTDGFLEHVADVTAEEVATG
GSDTLVFLPGAREIERVVRSLTARLGGRAEILPLHGGLDAAEQDRVVSGSGREGPHPGRG
GAGPPPRIVVSTDLAESSLTVPGVRVVVDACLNREPRRDTARDMTGLLTVSASRDSCVQR
SGRAARLGPGIAVRCLSEDDYSRLTPHRTPAIATSDLTSFALDVACWGAPRGEGLALTDP
PPSGEIRRAQRVLQGLGALDALGRATGRGRDLSRVPADPRHARALLDGAPVVGRARAAEV
VALLTSGRRSPTGDLVADLRALVGGRASDNRTWELEARRLERLVPTGGGRKEAPLEEAVG
LIVALAHPDRVARRRGGQYTFASGTGAVLPPGSALAGHEWLAVAEVARASGRTAGDAGAV
IRSAAPLSRAGAESAASELLDDEETARVAGGAVTARRIRRLGAIELSVTPVRPSPEAAAS
AVADAVRSGGLAALGPDDDARRLWLRLALARRELGPPWPDVSAEALADRLPEWLGPEVES
MTRGGTLRGRDVGGALRRLLPWPEASRFDELVPDRLQVPSSSWYRVDYPEPGSDASPVLA
VKLQECFGWTSSPRICDKRVPVTVHLLSPAGRPLGVTRDLEFFWREAYPGVRAEMRGRYP
RHPWPEDPMAAEPTRRTTRHR
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgttcgatctggaccggatcggccgcggcctgcccttcaccgacgcgctcccg
gccctgcggcgcgcgctcgccacggcgggtacggcggtggtccaggctccgcccgggacg
ggcaagaccaccctcgccccgccggcggtcgcctcggcggacgggatcgcgggacgggtc
gtcgtcacccagccccggcgggtggcggcccgttcggcggcgcggcgactggcggcgctg
accggaacggaggtcggcagcctggcggggtactcggtccggggggacacccgggtcggc
cgggacaccctcgtggagttcgtgacaccgggcgtgctggtgaggaggctgatcgccgat
ccggacctgacgggggcgggagcggtggtgctcgacgagatccacgagcgggacgtcgag
tccgatctcgcactggccctgttgtgcgaggtgcgccagctccgggacgacctgccggtg
gtggcgatgtccgcgaccctcgactccggccgcatcgcccgcctgctggggggcgccgga
gcgggcggcgccggagcgggcgccaccggggcggcgccggtgatcgaactccccgccgtc
ctgcatcccctcgacatccgctaccgcccgtcgcccgttccccgcctcgacgcccggggg
gtcaccgacggcttcctcgagcacgtggcggacgtcactgccgaggaggtggccacgggc
ggctcggacaccctcgtcttcctccccggggcgcgtgagatcgagcgggtggtgcggtcg
ctcaccgcgcgactgggcgggcgcgccgagatcctgccactgcacggtggcctcgacgcc
gccgagcaggaccgggtggtctcgggctccggccgcgagggtccgcacccgggccggggc
ggggccggcccaccgccccggatcgtggtctcgaccgacctggcggagtcctcgctcacc
gttcccggggtgcgggtggtggtggacgcgtgcctgaaccgcgaaccccgcagggacacc
gcccgcgacatgaccggtctcctcaccgtctcggcctcccgcgactcctgcgtccagcgc
tcgggacgcgcggcacgtctcggaccggggatcgcggtgcgctgcctgtccgaggacgac
tactcacggctcaccccgcaccgcaccccggcgatcgcgacctccgacctgacgtccttc
gccctggacgtcgcctgctggggcgctccccgcggcgagggcctggcgctgaccgatcct
cctccgtcgggggagatccgtcgcgcgcagcgggtcctgcagggactgggcgcgctcgac
gcgctgggccgggccaccggacgcgggcgggacctgtcccgcgtccccgcggacccgcgg
cacgcccgcgcgttgctcgacggcgcccccgtggtcggccgcgcgagggccgcggaggtg
gtggcactgctgacgtcgggccgccgctcaccgacgggggacctggtggcggacctgcgg
gccctggtcggcggccgagcctcggacaaccggacctgggagctcgaggcccgccgcctg
gaacgactcgtccctaccggcggggggaggaaggaggccccgctcgaggaggcggtcggt
ctcatcgtggccctcgcgcaccccgatcgggtcgcgcgccgccggggtgggcagtacacg
ttcgcgtcgggcaccggggcggtcctcccgccgggctccgccctcgccggtcacgagtgg
ctcgcggtggccgaggtcgcgcgagcctcggggcggaccgccggggacgcgggagcggtg
atccgttccgcggccccgctgagccgggcgggagccgagagcgcggcgtcggagctactc
gacgacgaggagacggcccgcgtcgcgggcggcgcggtgacggccagacggatccgacgg
ctcggcgcgatcgaactgtccgtcacccccgtgcgtccgagccccgaggccgccgcgtcg
gccgtcgcggacgccgtccgctccggtggcctggccgcgctcggacccgacgacgacgcc
cgacgtctgtggctccgactggctctcgcccggcgggaactcgggcccccctggcccgac
gtgtccgccgaggcactcgcggaccgtctcccggagtggctcgggccggaggtcgagtcc
atgacgcgaggcggcacgctcagggggcgcgatgtcggcggcgcgctccgacgactgctc
ccgtggccggaggcctcccggttcgacgagctcgtgcccgatcgcctgcaggtgcccagt
tcgtcgtggtaccgcgtcgactatccggaacccggatccgacgcgtcccccgtacttgcg
gtgaagctgcaggagtgcttcgggtggacctcctcaccccggatctgcgacaaacgggta
cccgtgacggtgcacctgctctcccccgccggccggccgctcggcgtgacccgcgacctg
gagttcttctggcgcgaggcgtatcccggtgtgcgggcggagatgcggggccgctatccc
cgacatccctggccggaggatccgatggccgcggagcccactcgccggaccacccgccac
cgctga
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