Dietzia sp. JS16-p6b: CT688_06560
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Entry
CT688_06560 CDS
T05397
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
diz
Dietzia sp. JS16-p6b
Pathway
diz03030
DNA replication
diz03430
Mismatch repair
diz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
diz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CT688_06560
03430 Mismatch repair
CT688_06560
03440 Homologous recombination
CT688_06560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
diz03032
]
CT688_06560
03400 DNA repair and recombination proteins [BR:
diz03400
]
CT688_06560
Enzymes [BR:
diz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CT688_06560
DNA replication proteins [BR:
diz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CT688_06560
DNA repair and recombination proteins [BR:
diz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CT688_06560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AVZ39180
LinkDB
All DBs
Position
1451268..1454822
Genome browser
AA seq
1184 aa
AA seq
DB search
MGGSQFVHLHNHTEFSMLDGMAQITPLFAEASRLGMPAVGMTDHGNMYGSSDFYKQAVKT
GITPIIGIEAYVAPESRFNKKRVLWGEKHQKGDDVAGSGAYTHMTMLAENATGLRNLFLL
SSLASYEGQLGKWARMDAEILAEHSEGIIATSGCPSGEIQTRLRLGQRKEAYEAAEKWQS
IFGKDNFFLELMDHGIDIERRVREDLVALGRDLGMPPLVTNDCHYVTREQAHAHEAMLCV
QTGKTLADENRFKFDGDGYFLKSADEMRAQWDPEVPGGCDNTLWIAERVQPYDEIWAPRD
RMPKFPVPEGETEDTWLAREVHKGLEWRFPAGVPQEYLDRAQFELEVIKGKGYPGYFLVV
GDLIEYARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPSAPDIDI
DFDDRRRGEMIRYASEKWGSDKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIADRITKA
LPPAIMAKDIPLSGITDPTHERYGEASEVRQLIETDPDVKRIYDTARGLEGMVRQAGVHA
CAVIMSSEPLLDVIPMWKRAQDGALITGWDYPSCEDIGLLKMDFLGLRNLTVIGDCLENI
KSNRGEEIDLDTLSTDDQATYDLLASGDTLGVFQLDSGGMRELLKRMKPTGFNDIVAALA
LYRPGPMGMGTHWNYADRKNGKQELTPIHPELEEPLKEILGETHGLIVYQEQIMAISREL
AGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMGERGFSKEAVDALWGTIEPFASYAFN
KSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIRVLPPSVN
ESLTNFVSVGEDIRFGMGAVRNVGTHVVDSVVSARKEKGEFTDFSDYLAKIDQTACTKKV
TESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDAEDAGGASAF
SDVFAVRVPDEEWDIKQKLALEREMLGLYVSGHPLDGLESALAAKTDTSIATIHEGELPH
GTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFPKTYRLAALDIAEDAVVLV
KARINIREDRVSVFGDTLEVPDLVVGGNGAPLALTLPTKMCTIETVTALKQVLGRHPGPS
DVHLRLVNGTSSTVLRLDDHLRVETSSSLMGDLKALLGPGCLTG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtgggcggatcccagttcgtgcatctgcacaatcacaccgagttctcgatgctcgacggg
atggcgcagatcaccccgttgttcgccgaggcctccaggctggggatgccggcggtggga
atgaccgaccacgggaacatgtacggctcctcggacttctacaagcaggccgtcaagacc
gggatcacaccgatcatcggcatcgaggcgtacgtcgcccccgagtccaggttcaacaag
aagcgtgtgctgtggggcgagaagcaccagaagggtgacgacgtcgcggggtcgggcgcc
tacacccacatgaccatgctcgcggagaacgccaccggtctgcgcaatctgttcctgctg
tcctccctggcctcgtacgagggacaactgggtaagtgggcccgcatggacgccgagatc
ctcgccgagcactccgaggggatcatcgccacctccggatgcccctccggagagatccag
acccgcctgcgcctgggtcagcgcaaggaggcctacgaggcggccgagaagtggcagtcg
atcttcgggaaggacaacttcttcctggagctcatggaccacggaatcgacatcgagcga
cgggtccgggaggacctggtcgcgctgggcagggacctgggtatgccgccgctggtgacc
aacgactgccactatgtcacccgcgaacaggcccacgcccacgaggcgatgctgtgcgtg
cagacgggcaagaccctcgccgacgagaaccgtttcaagttcgacggcgacgggtacttc
ctcaagtccgccgacgagatgcgggcccagtgggatcccgaggtccccggtgggtgcgac
aacacgctgtggatcgccgaacgcgtccagccgtacgacgagatctgggccccgagggac
cggatgcccaagttcccggtgcccgagggcgagacggaggacacgtggctggcccgtgag
gtccacaagggtctggagtggcgctttcccgcgggggtaccgcaggagtacctggaccgc
gcgcagttcgaactcgaggtgatcaagggcaaggggtaccccgggtacttcctcgtggtc
ggtgacctcatcgagtacgcccgttccatcgggatcaaggtcggtccgggccggggctcc
gcggcgggtgcgctcgtggcctacgcactcaagatcaccaacatcgacccgatcgagcac
ggcctgctgttcgagagattcctcaacccggagcgcccgtccgcgccggatatcgatatc
gacttcgacgaccgccgccgcggcgagatgatccgctatgccagcgagaaatggggttcg
gacaagatcgcccaggtcattacgttcggcaccatcaagaccaaggccgccatcaaggac
gccgcccgcgtgaacttcggccagcccggctacgcgatcgccgaccggatcaccaaggcc
ctgccgccggcgatcatggccaaggacatccccctgtcgggcatcaccgaccccacgcac
gagcgctacggcgaggcctcggaggtccgccagctcatcgagacggacccggacgtcaag
cggatctacgacaccgcccgcgggctggagggcatggtccgccaggcgggcgtccacgcg
tgtgcggtgatcatgtcctccgagccgctgctcgacgtgatccccatgtggaagcgtgcc
caggacggcgccctcatcaccggctgggactacccctcgtgcgaggacatcggcctgctc
aagatggatttcttgggcctgcgcaacctcactgtgatcggcgactgcctggagaacatc
aagtccaaccgcggcgaggagatcgacctcgacacgctcagcaccgacgatcaggcgacc
tacgacctgctggccagcggcgacacgctgggggtgttccagctggactccggtggcatg
cgcgagctcctcaagcggatgaagcccaccggcttcaacgacatcgtggccgctctcgcc
ctgtaccgacccgggccgatggggatgggcacgcactggaactacgccgaccgcaagaac
ggcaaacaggagctcaccccgatccacccggagctggaggagccgctcaaggagatcctg
ggcgagacccacgggttgatcgtgtaccaggagcagatcatggcgatctcccgcgaactc
gcgggctacacggccggtgaggccgacgggttccgcaaggccatgggtaagaagaaggca
gaggtcctcgcggccgagtacgagaagttctccggcggcatgggtgagcgcgggttctcc
aaggaggccgtggacgcgctctggggcaccatcgagccgttcgcctcctacgcattcaac
aagtcccacgcggccggctacgggctggtgtcgttctggaccggttacctcaaggccaat
tacccggcggagtacatggccgccctgctcacctccgtgggcgacgacaaggacaaggcc
gcgctgtacctgtccaactgccggcagatggggatccgggtgctgccgccgtcggtcaac
gagtcgctcaccaacttcgtctcggtgggcgaggacatccgcttcgggatgggtgcggtc
cgcaatgtcggtacgcacgtggtggactccgtcgtgtccgcgcgcaaggagaagggggag
ttcaccgacttctccgactacctggcgaagatcgaccagaccgcgtgcaccaagaaggtc
accgaatcgctgatcaaggccggagcgttcgactccctgggacacccgcgcaagggcttg
ttcctggtccacgccgacgcggtcgagtcggtgatgtccaccaagaaggccgaggcggtg
ggtcagttcgacctgttcggcggcggggatgcggaggacgccgggggagcctcggcgttc
agtgacgtcttcgcggtccgggtccccgacgaggagtgggacatcaagcagaagctggcg
ctcgagcgggagatgctgggactatacgtctcgggccacccgctcgacgggctggagtcc
gcgctcgccgccaagaccgacacgtctatcgccaccatccacgagggcgagctcccgcac
ggcaccgcggtgacgatcggcgggatcatctccggcgtggaccggcgggtcaacaagaac
ggcgaaccgtgggcgatcgtgacgatcgaggacttcaacggcagcgtcgaggtgctcttc
ttccccaagacctatcgcctcgccgccctcgacatcgccgaggacgctgtcgtcctggtc
aaggctcgcatcaacatccgcgaggaccgggtctcggtgttcggcgacaccctcgaggtg
ccggacctggtcgtgggtggcaacggcgccccgctggcgctgacgttgcccacgaagatg
tgcaccatcgagacggtcaccgccctcaagcaggtcctcgggcggcaccccggtccctcg
gacgtccacctgcggttggtcaacgggacgtcgtccacggtgttgcggttggacgaccat
ctgcgggtcgagacatcgtcttcgctcatgggggatctcaaggcgctcctcgggccgggc
tgcctcaccggatga
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