Dietzia sp. JS16-p6b: CT688_09670
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Entry
CT688_09670 CDS
T05397
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
diz
Dietzia sp. JS16-p6b
Pathway
diz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
diz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT688_09670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
diz03021
]
CT688_09670
03019 Messenger RNA biogenesis [BR:
diz03019
]
CT688_09670
Transcription machinery [BR:
diz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CT688_09670
Messenger RNA biogenesis [BR:
diz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CT688_09670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVZ39698
LinkDB
All DBs
Position
complement(2113404..2115506)
Genome browser
AA seq
700 aa
AA seq
DB search
MTSTETHSTPPQGAALAAMRLADLKSLAQQMGLKGLSGKRKSDLVAMIDAARGGRSQAAA
QSSPAQSSPARTPAESTPAAAADTAPGQDGQEAAEGQKAATGRRAGGGQRTGGQAKNVDQ
DARRDEGQSRGDGQDPGDRDRRDEAARGGGQAQNQQQGQNPQESQNQGTRQRRGGQHRDE
QQSGRQDQGQSGRDNQGRENQGRDNQGRDNQGRDNQGRDQQGGRGRGRDQQGGDSGNPRN
QGNQGNQGGDSGPRGDGQNRDDDDGSGRGRRSRRRRERNRGGGGGRPQEGETEVRDDDVL
QPVAGILDVLDNYAFVRTSGYLAGSNDVYVSMNMIRKYGLRRGDAITGAVKMPRDGQGDA
QNDGSGGGQGGGRGGGQGGKNRAKFNPLARIDSVNGGPPEDARNRPEFGKLTPLYPNQRL
RLETEKNVLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANSIAINNPECHLMVVL
VDERPEEVTDMQRSVNGEVIASTFDRPPSDHTQVAELAIERAKRLVEMGQDVVVLLDSIT
RLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIISTAMVETGSAGD
TVIFEEFKGTGNAELKLDRRIAERRVFPAVDVGPSGTRKEELLMTPEEAGVMHKLRRVLS
GLDSHQAIDLLMSQLRKTNTNYEFLLQVAKTTPTLPQDEE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgacggaaacccactccacacctccgcagggggctgcactggcagccatgcgt
ctggcggacctcaagtctctcgcccagcagatgggcctcaaggggctgtcaggtaagcgc
aagagcgatctggtggcgatgatcgacgccgcccgcggtggacggtcccaggctgccgcc
cagtcctcgcccgcccagtcctcgcccgcccggactcccgccgagtccacgccggccgcg
gctgcggacaccgcccccgggcaggacggccaggaggccgcggaggggcagaaggccgct
accggacggagggccgggggtggtcagaggaccgggggacaggcgaagaacgtggatcag
gatgcccgccgcgacgaaggtcagagccgcggcgacgggcaggacccgggcgatcgtgac
cgtcgggacgaggctgcccgcggcggcggtcaggcgcagaaccagcagcagggccagaac
ccgcaggagtcccagaaccagggcacccgacagcgacggggcgggcagcaccgcgacgag
cagcagtcgggccgccaggaccagggccagtcgggccgcgacaaccagggccgcgagaac
cagggccgcgacaaccagggtcgcgacaaccagggccgcgacaaccagggacgtgatcag
cagggcggccgcggtcgcggtcgcgaccagcagggcggcgattccggtaacccccgcaac
cagggcaaccagggcaaccagggcggagacagcggcccgcggggcgacggtcagaaccgt
gacgacgacgacgggagcggccgcggtcggcggagccgccggcggcgcgagcgcaaccgc
ggtggtggcggtggccgtccgcaggagggcgagaccgaggtgcgggacgacgacgtcctc
caaccggtcgcgggcatcctcgacgtcctggacaactacgcgttcgtccgtacctcgggc
tacctcgcggggtcgaacgacgtctacgtctcgatgaacatgatccgcaagtacggtctg
cgtcgcggcgatgcgatcacgggcgcggtcaagatgccgcgggacggtcagggtgacgcc
cagaacgacgggtccggcggcggccagggcgggggtcgcggcggcggtcagggtgggaag
aacagggcgaagttcaacccgctggccaggatcgactcggtcaacgggggtcccccggaa
gacgcgcgcaatcgcccggagttcggcaagctcacgccgctttaccccaaccagcgtctg
cgtctcgagaccgagaagaacgtcctctcgacccgggtgatcgatctgatcatgcccatc
ggcaagggccagcgggcgctcatcgtctccccgcccaaggcgggcaagaccacgatcctg
cagaacatcgccaactcgatcgccatcaacaaccccgagtgtcatctcatggtcgtgctc
gtcgacgagcgacccgaggaggtgaccgatatgcagcgttcggtcaacggcgaggtcatc
gcctcgaccttcgaccgcccgccgtcggatcacacccaggtcgcggagctcgcgatagaa
cgcgccaagcgacttgtggagatgggccaggacgtcgtggtcctcctcgattccatcacc
cggttgggtcgcgcctacaacaactcctctcccgcctcgggtcgcatcctgtccggcggt
gtcgactccaccgcgctctacccgcccaagcggttcctgggagcggcacgcaacatcgag
aacggtggctccctcaccatcatctccaccgcgatggtcgagacggggtccgccggtgac
acggtgatcttcgaggagttcaagggcaccggtaacgcggaactcaagctggaccggcgc
atcgctgagcggcgcgtcttccccgcggtcgacgtggggccctcgggcacccgcaaggag
gagctcttgatgacgccggaggaggccggtgtcatgcacaagctgcggagggtgctgtcg
ggcctcgactcgcatcaggcgatcgacctgctgatgtcgcagctgcgcaagaccaacacc
aactacgaattcctcctgcaggtggcaaagacgactccgaccctgccgcaggacgaggag
tga
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