Dietzia sp. JS16-p6b: CT688_09740
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Entry
CT688_09740 CDS
T05397
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
diz
Dietzia sp. JS16-p6b
Pathway
diz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
diz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT688_09740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
diz03019
]
CT688_09740
03009 Ribosome biogenesis [BR:
diz03009
]
CT688_09740
Enzymes [BR:
diz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CT688_09740
Messenger RNA biogenesis [BR:
diz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CT688_09740
Ribosome biogenesis [BR:
diz03009
]
Prokaryotic type
rRNA helicases
CT688_09740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
AVZ41192
LinkDB
All DBs
Position
complement(2133632..2135407)
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AA seq
591 aa
AA seq
DB search
MGLDPAVAKAVKDVGYEVPSGIQAAIIPLVMEGRDVVGLAQTGTGKTAAFALPILSLIDP
SVKSPQALVLAPTRELALQVAEACITYSANMPQVSVLPIYGGQAYGIQLSGLRRGAQIIV
GTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPQSTQVALFSATM
PAAIRRISQKYLTDAAEVKVASKTATAPTIQQRYVLVNHRDKLDALTRIFEVEDFDAMIL
FVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAARGLD
VPRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVTPRERRLLSQIERATRQPLTE
IQLPSVDDVNEMRMAKFAQSITESLNDPNLAMFRRLVEEYAAEHSVSMADIAAALATQSR
NSADFLMREPERPARRDRQDDRRDPRRDDRRERPGRGFSDGPRPSRSGKDMAQYRIAVGK
RNNVKPGSIMGALANEAGLSGGDIGRISIRFDHSIVELPAGLSRDQIDSMRGIRVSGTEI
DIRPDSGPPAGRPSATRDDRGGRPRGGDRGGRDDRRGGGFRGRSGGGSDRY
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggggctcgacccggccgtcgccaaggcggtcaaggacgtcgggtacgaggtcccctcg
ggcatccaggcggccatcatcccgctggtgatggagggccgcgacgtcgtggggttggcg
cagaccggaaccggcaagaccgcggccttcgcgctgccgatcctctccctcatcgacccg
tcggtcaagagcccgcaggcgctcgtgctggcccccacccgcgagctcgcgctgcaggtc
gccgaggcgtgcatcacctattccgccaacatgcctcaggtcagcgtcctgccgatctac
ggtgggcaggcctacgggatccagctctccggtctgcggcggggggcacagatcatcgtg
gggacgcccggtcgggtgatcgatcacctgaagaagggcacgctcgacctgtcgggcctg
cgtcatctcgtcctcgacgaggccgacgagatgctcgcgatgggcttccaggaggatgtc
gaacggatcctctcggacaccccgcagtccacccaggtcgcgctgttctcggccacgatg
ccggctgccatccgccggatctcccagaagtacctcaccgacgcggccgaggtgaaggtc
gcctcgaagacggccacggcgccgaccatccagcagcgttatgtgctggtgaaccaccgc
gacaaactcgacgcgctgacgcggatcttcgaggtcgaggacttcgacgcgatgatcctg
ttcgtccgcaccaaatcggccacggaggagctggcggaacgtctgcgggcccgtgggttc
tccgcggcaccgatcaacggcgacatcccccagaaccttcgcgagcggaccatcgaggcg
ctcaaggacggtcggaccgacatcctggtggccacggacgtcgcagcgcgtggtctggac
gtgccccggatcagccacgtggtcaactacgacatcccgcatgacacggagtcgtacgtc
caccggatcggccgcacgggccgcgcgggtcgcagtggccaggcgctgctgttcgtcacc
ccgcgggaacgccggttgctctcgcagatcgagcgggccaccaggcagccgctgacggag
atccagctgccgagcgtggacgacgtcaacgagatgcgcatggccaagttcgcccagtcg
atcacggagagcctgaacgacccgaacctggcgatgttccgccgcctcgtggaggagtac
gccgccgaacactcggtctcgatggccgacatcgccgccgccctcgccacccagtccagg
aactccgccgacttcctcatgcgggagcccgagcggccggcccggcgtgatcggcaggac
gatcgccgcgacccccggcgggacgaccggcgcgagcgccccgggcgcggcttctcggac
gggccccgcccctcgcggtccggcaaggacatggcgcagtaccggatcgccgtgggcaag
cggaacaacgtcaagcccggatcgatcatgggcgcgctggccaacgaagccggactcagc
gggggcgatatcgggcgcatctcgatccgtttcgaccactcgatcgtcgaactccccgcg
ggtctgtcccgtgaccagatcgactcgatgcgcggaatccgggtctccggtacggagatc
gacatccgtccggactccggcccgcccgccggtcgcccgtccgccacgagggacgaccgc
gggggccgcccccgcggtggggatcgcggtggccgcgacgaccgccgcggaggcgggttc
cgtggccgctcgggcggcggatcggacaggtactga
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