Dietzia sp. JS16-p6b: CT688_16550
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Entry
CT688_16550 CDS
T05397
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
diz
Dietzia sp. JS16-p6b
Pathway
diz03420
Nucleotide excision repair
diz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
diz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CT688_16550
03430 Mismatch repair
CT688_16550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
diz03400
]
CT688_16550
Enzymes [BR:
diz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CT688_16550
DNA repair and recombination proteins [BR:
diz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CT688_16550
MMR (mismatch excision repair)
Other MMR factors
CT688_16550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
UvrD_C_2
UvrD_C
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
AVZ40837
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All DBs
Position
3574901..3576679
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AA seq
592 aa
AA seq
DB search
MTARESAAADNAERASEEALATLFAALDSRRNFKLEAGAGAGKTYSLIQALRRILKNKSV
YLPRSDQRVACLTYTKVARDEIKARTDEDPAIFADTLHGFLWEMISPYQKALATALRSSE
TWQERLAENSDISGLAIEYDLGIRGLHEDRITLHHNDIPEFAIQLFGNEKFRSLITDRFP
VIFIDEYQDTPSGLAEAVLSGHGEDRTSPVVGFFGDHWQQIYDRTCGSIEHSSLTSIPKN
ANFRSDRSVVDFLNKLRPELPQAPRADADEGTVTVYHSNTWPGARLGRNWKGQISQEATQ
ACLEWLQVASPSSTWIQNSKDLKVLMLTHATIANELGYPSLPGVFSSNDSFANKEDPVIE
FLVDTAEPAMQAFSEHKYGELFRLLGSKRPTLTAPKDKHRWSEFFNSLISTSSTGTIGDV
LDLLNSQNLFSVPTRVVKRGRDLEEALLSLGPGEELEEPRKLVEHRSLRSVPYAEIRALR
SYLEDSTVFSTKHSVKGAEFDDVIVLVGRGWTKYDFAKMIAAHAPQSKPELRQAGSFPHS
RNLFYVSASRAKHNLALLFVQELSDDAVAVLEDWAGQENVISIEFDEAGVLL
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcccgggagagcgccgcggctgacaacgccgagagggcaagcgaggaagctctc
gccaccctctttgccgcactcgatagtcgcaggaacttcaaactcgaagcgggcgctgga
gcaggcaagacctactcactgatccaagccctgcgacgcatcctgaaaaacaagtccgtc
taccttccccgcagcgatcaacgagtcgcttgcctgacgtacaccaaggtcgcccgcgac
gaaatcaaagcaagaaccgacgaagaccccgccatcttcgccgacacccttcacgggttc
ctctgggagatgatcagcccataccagaaggcactcgctacggctctccggtcgtcggaa
acctggcaggagcgtctcgccgagaattcagatatcagcgggctggcgatcgagtacgac
ctaggtattcgtggccttcacgaggatcgaatcacgctccatcacaacgacatccccgag
tttgcgattcagctcttcggcaatgagaagttccgctcgctaatcacggaccggttcccc
gttatcttcatcgacgagtaccaggacaccccatctgggcttgccgaagcggttctgtcc
ggtcacggggaagaccgcacaagccctgtcgtgggtttcttcggcgaccactggcaacag
atttacgacagaacttgtggctcgatcgagcattcttcgctcacatcgatccccaagaac
gccaacttccgatcagaccgatcagtcgtcgacttcctcaacaagttacgcccggagctt
ccgcaggcacctcgggccgacgctgacgagggcacagtgacggtctaccactccaacact
tggccgggcgcccgtctgggcagaaactggaagggtcagatctcccaggaagctacccag
gcatgtctggaatggctccaagtcgcgtccccaagtagcacatggatccagaactcaaag
gacttgaaagtcctgatgctcacgcacgcgacgatcgcgaacgagttgggctaccccagc
cttccgggtgtcttctcgtccaacgactccttcgccaataaggaagacccggtgatcgag
ttccttgtcgacactgcggaacccgctatgcaggcgttttccgagcacaagtacggagag
ctgtttcgcctcctgggaagcaagagaccaacactcaccgcaccgaaagataagcatcgc
tggtccgagttctttaattcgctcatctcgaccagcagtacgggcacgatcggtgatgtg
ctggacctcttgaactcgcagaatctcttctccgtgcccacacgggtagttaagagagga
cgcgacctagaagaagcactactgtctctcggccctggagaggaactagaagagccgcga
aagctggtggagcatcggtcgctacggtccgtaccgtatgccgaaatacgcgcactccgc
tcctatttggaagacagtaccgttttctcaaccaaacactctgtcaaaggcgcagagttt
gacgacgtgatcgtccttgttgggcgcggctggactaagtacgacttcgccaagatgatc
gccgcccacgctccgcagagcaaaccagaactcaggcaggccgggagcttcccgcactca
cgcaacctcttctacgtctccgcttcgcgagcaaaacacaaccttgcactgctattcgtt
caagagctcagcgacgacgcagtcgcggttctcgaggattgggctgggcaggaaaatgtg
atctccatagagttcgacgaggcgggcgtactgctctga
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