KEGG   Dyella japonica: HY57_00390
Entry
HY57_00390        CDS       T03215                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
dja  Dyella japonica
Pathway
dja03030  DNA replication
dja03410  Base excision repair
dja03420  Nucleotide excision repair
dja03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HY57_00390
   03410 Base excision repair
    HY57_00390
   03420 Nucleotide excision repair
    HY57_00390
   03440 Homologous recombination
    HY57_00390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dja03032]
    HY57_00390
   03400 DNA repair and recombination proteins [BR:dja03400]
    HY57_00390
Enzymes [BR:dja01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HY57_00390
DNA replication proteins [BR:dja03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HY57_00390
DNA repair and recombination proteins [BR:dja03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     HY57_00390
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HY57_00390
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: AIF45828
UniProt: A0A075K0P5
LinkDB
Position
87499..90261
AA seq 920 aa
MAKLILIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRAALKAKPDYVAFVSDAPG
PTFRNQLYDQYKANRPPMPDDLRAQVEPMLAIVGALGFPILRVGGVEADDVIGTLALQAH
AQGIEVEVSTGDKDLAQLVRPGVHLVNTMTNTTMDNAGVMEKFGVEPSQIVDYLSLTGDT
VDNVPGVPKCGPKTAAKWLAEYGTLDNLMANADKVGGKIGESLRAALPQLPLSRELVTIK
TDVPLDQSVTELTFRERHVDQLRELYTRYEFKAALKDLDAESAAAPVRDTHSPGTSTEAS
RAQGALPQKSSDAPELSMAGQYELVTTQAQFDAWMAKIATAPLVSFDTETTSIDSMQADI
VGLSLSVEPGHACYVPLAHDYPGAPAQLSREHVLATLKPFFEDASRPKMGQHAKYDINIL
SNYGIRLAGLQHDSMLESYVWNATATRHDMDSLAKKYLDVDTIKYEQVAGKGAKQIPFSQ
VDVDTACRYAAEDADITLRLHHALWPKLETVPSLRSVYENIEIPLIPVLASMEQRGVLID
VNELRMQSQQLGKRMLELQQEAWKGAGHEFNLDSPKQLQAVLFDELGLPIKVKTPTGQPS
TNEEALEAIADDHALPRLILDYRGLAKLRSTYTDKLAEMVNPRTGRVHTSYHQGSVATGR
VSSSDPNLQNIPIRTDEGRRIRQAFVAPEGWVVLAADYSQIELRIMAHLSGDEGLLKAFH
EGGDVHRATAAEVFGLKPEEVSANQRRAAKAINFGLMYGMSAFGLARQLGVDRGEASDYM
ARYFSRYPGVHAFMEATRQQAHRDGYVETLFGRRLYLENLTSRNQALRAGAERAAVNAPM
QGTAADIIKRAMITVHDWLGTRNDDAHMLMQVHDELVFEVRKEVVDEVRAGVIERMSGAA
KLSVPLLVEAGVGKNWDEAH
NT seq 2763 nt   +upstreamnt  +downstreamnt
atggccaaactcatcctgatcgacggttcctcttacctttaccgcgccttccatgcgctc
ccgccgctatccaacgcgcaaggcgagcccaccggcgccttgttcggcgtggtgaacatg
ctgcgcgcggcgctcaaggcgaaacccgattatgtggccttcgtcagcgatgcgccgggc
cccacgttccgcaaccagctctacgatcagtacaaggcgaatcgcccgccgatgccggac
gacctgcgcgcgcaggtggagccgatgctcgccatcgtcggcgcgctgggcttcccgatc
ctgcgcgtcggcggcgtggaggcagacgacgtgatcggcacgctcgccctgcaggcgcac
gcgcaaggcatcgaggtggaggtatccaccggcgacaaggacctcgcgcagctggtgcgt
cctggcgtgcacctggtcaacacgatgaccaacacgacgatggacaatgccggcgtgatg
gagaagttcggcgtcgagccgtcgcagatcgtggattacctgtcgctcaccggcgacacc
gtcgacaacgtgccgggcgtgcccaagtgcggccccaagacggcagccaaatggctggcc
gagtacggcacgctcgataacctgatggccaacgccgacaaggtcggcggcaagatcggc
gagagcctgcgcgccgcgctgccgcaactgccgctgtcgcgcgaactggtgaccatcaag
accgacgtgccgctggaccagtcggtcaccgaactgacgttccgcgaacgccacgttgat
cagttgcgcgagctttacacgcgctatgagttcaaggcggcgctgaaggatctggacgcc
gaatcggccgcagcccctgtgcgcgacacgcactcgccgggcacctctactgaggccagt
cgcgcacagggtgcgctcccacagaaaagcagtgacgcgccggagctttccatggccggc
cagtacgaactggtcaccacgcaggcacagttcgatgcgtggatggcgaagatcgccacc
gcaccactggtgtcgttcgacaccgaaaccacttccatcgactcgatgcaggcggacatc
gtgggcctcagcctgtcggtggaaccgggccacgcgtgctatgtgccgctggcgcatgat
tatcccggcgcacccgcgcagctttcgcgcgagcacgtgctcgccacgctcaagccgttc
tttgaggacgccagccgcccgaagatgggccagcacgccaagtacgacatcaacatcctg
tccaactacggcatccgcctggctggcctccagcatgattcgatgctggagtcctacgtg
tggaacgccacggcgacgcgccacgacatggattcgctggcgaagaaatacctcgacgtc
gacaccatcaagtacgagcaggtggccggcaagggcgccaagcagattccgttctcccag
gtggatgtggacaccgcctgccgctacgccgccgaggacgcggacatcaccctgcgcctg
caccacgccctgtggcccaagctggaaaccgtgccctcgctgcgctcggtgtacgagaac
atcgagattccgctgatccccgtgctggcatccatggagcagcgcggtgtgctgatcgac
gtcaacgaactgcgcatgcagagccagcaacttggcaagcgcatgctggagctgcagcag
gaagcctggaagggcgcgggccacgagttcaacctcgattcgcccaagcagctgcaggcc
gtgctgttcgacgagctgggcctgcccatcaaggtgaagacgcccacgggccagccctcg
accaacgaagaagccctggaagcaatcgccgacgaccacgcgctgccgcgtttgatcctc
gactaccgcggtctggccaagctgcgctcgacgtatacggacaagctggcggagatggtc
aacccgcgcaccggccgcgtgcacaccagctaccaccagggctcggtggcgacggggcgc
gtgtcctcatccgacccgaacctgcagaacatccccatccgcaccgacgagggccggcgc
atccgccaggccttcgtggcgccggagggctgggtggtgctggcggccgactactcgcag
atcgaactgcgcatcatggcgcacctgtccggcgacgaaggcctgctcaaggccttccac
gaaggcggcgacgtgcatcgagccaccgccgccgaggtgttcgggctcaagccggaagaa
gtcagcgcgaatcagcgccgtgccgccaaggccatcaacttcggcctgatgtacggcatg
agcgcgtttggcctggcccgccagctgggcgtggatcgcggcgaggccagcgattacatg
gcccgctatttctcacgctatccgggcgtgcacgccttcatggaggccacccgccagcag
gcccaccgggatggctacgtggaaaccctgttcggccgccgcctgtatctggaaaacctc
acctcgcgcaaccaggccctgcgcgccggcgccgagcgcgccgcggtcaacgcgcccatg
cagggtacggcggccgacatcatcaagcgcgccatgatcaccgttcacgactggctgggt
acacgcaacgacgacgcccacatgctcatgcaggtgcacgacgaactggtgttcgaggtg
cgcaaggaagtcgtcgacgaggtgcgggccggcgtgatcgagcgcatgtccggcgcggcg
aagctgtccgtgccgctgctggtggaggcgggggtgggcaagaactgggacgaggcgcac
tga

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