Dyella japonica: HY57_09260
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Entry
HY57_09260 CDS
T03215
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dja
Dyella japonica
Pathway
dja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HY57_09260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dja03019
]
HY57_09260
Enzymes [BR:
dja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HY57_09260
Messenger RNA biogenesis [BR:
dja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HY57_09260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Flavi_DEAD
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
AIF47446
UniProt:
A0A075JZC5
LinkDB
All DBs
Position
complement(2215484..2216815)
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AA seq
443 aa
AA seq
DB search
MSFESLGLGPALLRALAEQGYAEPTPIQAAAIPVVMEGVDLLAAAQTGTGKTAAFSLPLL
HRLSQLPPAGTRRPRALVLTPTRELAAQVHDNLRDYGKHLRISATTIFGGVGMGPQMQAL
RRGVDIVIATPGRLIDHMQQRSIDLSGIDVLVLDEADRMLDMGFLPALKRILAALPKRRQ
TLLFSATFAPPIKALALQFMHEPREVSVTPPNTVANTVTHHVHPVDAAKKRDLLLHVLSQ
DSRRQTLVFSRTKHGADKLVRFLEAAGMRAAAIHGNKSQNARTRALGDFKSGRITVLVAT
DIAARGIDIDQLPIVINFDLPMVAEDYVHRIGRTGRAGADGMAVSLVSHDESGLLRDIRK
LLKQDIAISDVPGFEPSHPLRTDAAAPRPVQGQRQPRPARPQGSRPQGSHRPHGHANGHG
HGGERPAEGNRKRQRRRRPAAKA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgaatcgctgggcctcgggcctgcgttgttgcgtgcgctcgccgaacagggc
tacgccgaacccacccccatccaggccgccgccattccggtggtgatggaaggcgtcgac
ctgctcgccgccgcccagaccggcaccggcaagacggccgccttctcgctgccgctgctg
catcgcctgtcgcaactgccgcccgcgggcacgcgccgtccgcgcgccctcgtgctgacc
ccaacgcgcgagctggccgcccaggtgcatgacaacctgcgcgactacggcaagcatctt
cgcatcagcgccaccaccatcttcggtggcgtcggcatgggtccgcagatgcaggcactg
cgtcgcggcgtggacatcgtcatcgccacgccgggccgcctgatcgaccacatgcagcag
cgctccatcgatctttccggcatcgacgtgctggtgctggacgaagccgaccgcatgctc
gacatgggcttcctgccagcgctcaagcgcatcctggccgcgctgccgaagcgccgccag
acgctgctgttctccgccacgttcgcgccgccgatcaaggcgctggccctgcagttcatg
catgagccgcgcgaagtgtcggtgacgccgcccaacaccgtggccaacaccgtgacgcac
cacgtgcacccggtggacgcggcaaagaagcgcgacctgctgctacacgtgctttcgcag
gacagccgccgccagacgctggtgttcagccgcaccaagcacggcgccgacaagctggtg
cgcttcctggaagccgccggcatgcgcgccgccgccatccacggcaacaaaagccagaac
gcgcgcacgcgtgcgctgggcgatttcaagagcggccgcatcaccgtgctcgtcgccacc
gatatcgccgcgcgcggcatcgacatcgaccaactgcccatcgtcatcaacttcgacctg
ccgatggtcgcggaagactacgtgcaccgcatcggccgcacgggccgcgccggtgccgac
ggcatggccgtgtcgctggtgagccatgatgaatcgggcctgctgcgcgacatccgcaag
ctgctcaagcaggacatcgcgatcagcgacgtgccgggtttcgaaccctcgcacccgctg
cgcaccgacgccgccgcgccgcgccccgtgcagggccagcgccagccgcgcccggcgcgt
ccccagggttcacgcccgcagggttcgcatcgtccgcacggccacgccaacggccatggc
cacggcggtgagcgccccgccgagggcaaccgcaagcgccagcgccgccgccgtcccgcc
gccaaggcctga
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