Dyella jiangningensis: CH75_05475
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Entry
CH75_05475 CDS
T03074
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dji
Dyella jiangningensis
Pathway
dji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH75_05475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dji03019
]
CH75_05475
03016 Transfer RNA biogenesis [BR:
dji03016
]
CH75_05475
Enzymes [BR:
dji01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CH75_05475
Messenger RNA biogenesis [BR:
dji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CH75_05475
Transfer RNA biogenesis [BR:
dji03016
]
Prokaryotic type
tRNA degradation factors
CH75_05475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_KhpA-B
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AHX12795
LinkDB
All DBs
Position
1174335..1176440
Genome browser
AA seq
701 aa
AA seq
DB search
MAKVTKSFQFGNHEVTLETGEIARQASGAVMVSMGGTVVLVTVVAAAKAKEGQDFFPLTV
DYVEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEEFKNEVQVIAQVVSLN
PEIDGDIPAMLGASAALSLAGIPFKGPIGAARVGYVDGKYLLNPTASELKTSKLDLVVAG
TANAVLMVESEAQLLSEEVMLGAVVFGHQQMQTAIRAIAELATEAARPSMSWQAPARNES
LVAALTGAVGNQLETAFQVRDKLQRRDAIAAIKADVLASLAADAEAKGWDKAELSKEFAE
LEYRTMRDGVLKTKIRIDGRNLDDVRPISIRVGVLPRTHGSALFTRGETQALVVTTLGTT
RDAQIIDAPEGESKDAFLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPTIE
EFPYVVRVVSEITESNGSSSMASVCGSSLAMMDAGIPLKAPVAGIAMGLVKEGGDFVVLS
DILGDEDHLGDMDFKVAGSADGISALQMDIKIDGITEEIMKVALEQAKRGRLHILGEMAK
VISTHRTEMSEFAPRLLTIKIHPDKIREVIGKGGATIRSITEETGTTIDISDDGTVVIAS
VNREAANAAKARIEQIVSDVEPGRIYEGKVAKLMDFGAFVTIMPGKDGLVHVSQISSERV
EKVSDKLKEGDIVKVKVLEVDKQGRIRLSMKAVAEDEGANA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaagtaaccaagtcattccagttcggtaatcacgaagtcacactggagacgggc
gaaatcgcccgccaggcttccggtgccgtcatggtcagcatgggcggtaccgtggtgttg
gtcaccgtggtggccgctgccaaggcgaaggaaggtcaagacttcttcccgctcacggtg
gactacgtcgagaagttctactcggccggccgcatcccgggtggcttcttcaagcgcgaa
ggccgcccgactgagaaggagacgctcacctcgcgtcttatcgatcgtccggtgcgcccg
ctgttcccggaagagttcaagaacgaagtgcaggtcatcgcacaggtcgtctcgttgaac
cccgagatcgacggcgacatcccggccatgctgggcgcctccgccgcgctgagccttgcc
ggcatcccgttcaagggtccgatcggcgccgcccgcgtcggttacgtcgatggcaagtac
ctgctgaacccgaccgcttcggaactgaagacctccaagctcgacctggtggtcgccggt
acggccaatgccgtgctgatggtggaatccgaagcccagctgctgtccgaggaagtgatg
ctcggcgccgtggtgttcggccaccagcagatgcagacggccatccgcgcgatcgccgag
ctggccaccgaggcggctcgtccgtccatgtcgtggcaggctccggcccgcaacgagtcg
ctcgtcgccgccctcacgggtgccgtgggcaaccagctcgagaccgccttccaggtgcgt
gacaagctgcagcgccgcgacgccatcgccgccatcaaggccgacgtgttggcctcgctg
gctgccgacgccgaagccaagggctgggacaaggccgagctgtcgaaggaattcgccgag
ctcgaataccgcaccatgcgcgacggcgtgctgaagaccaagatccgcatcgacggccgc
aacctcgacgacgtccgcccgatcagcattcgcgtcggcgtgctgccacgcacccacggt
tcggcgctgttcacccgcggcgaaacgcaggcgctggtcgtgaccacgctgggcaccacg
cgcgacgcgcagatcatcgacgcgccggaaggcgagtcgaaggatgccttcctgttccac
tacaacttcccgccgttctcggtgggcgaagccggtcgcttcggcgccccgaagcgtcgc
gaaatcggccatggccgtctcgccaagcgcggcgtgcaggcggtgaagccgaccatcgaa
gagttcccgtacgtggttcgcgtggtctcggaaatcaccgagtccaacggttcctcgtcg
atggcttcggtgtgcggttcctcgctcgccatgatggatgccggcatcccgctgaaggct
ccggtggcgggtatcgccatgggcctggtgaaggaaggcggcgacttcgtcgtgctgtcc
gacatcctgggtgacgaagaccacctcggcgacatggacttcaaggtggccggtagcgcc
gatggcatctccgcgctgcagatggacatcaagatcgacggcatcaccgaagagatcatg
aaggtggcgctggagcaggccaagcgtggccgcctgcacatcctcggcgagatggcgaag
gtcatcagcacccatcgcaccgagatgagcgagttcgccccgcgcctgctcaccatcaag
atccacccggacaagatccgcgaagtcatcggcaagggcggcgccaccatccgctcgatc
accgaagagaccggtaccaccatcgacatcagcgacgacggcaccgtggtcatcgcttcg
gtcaatcgtgaggctgccaacgccgccaaggcgcgcatcgagcagatcgtctccgacgtc
gagccgggccgcatctacgagggcaaggtcgccaagctaatggacttcggcgcgttcgtg
accatcatgccgggcaaggacggcctggttcacgtctcgcagatttccagcgagcgcgtg
gagaaggtctccgacaagctgaaggaaggcgacatcgtcaaggtcaaggtgctggaagtg
gacaagcagggccgtatccgcctgtccatgaaggccgtggccgaggacgaaggcgcgaac
gcctga
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