Dyella jiangningensis: CH75_06625
Help
Entry
CH75_06625 CDS
T03074
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dji
Dyella jiangningensis
Pathway
dji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH75_06625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dji03019
]
CH75_06625
03009 Ribosome biogenesis [BR:
dji03009
]
CH75_06625
Enzymes [BR:
dji01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CH75_06625
Messenger RNA biogenesis [BR:
dji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH75_06625
Ribosome biogenesis [BR:
dji03009
]
Prokaryotic type
rRNA processing factors
CH75_06625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHX12955
LinkDB
All DBs
Position
complement(1389772..1392891)
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFVDY
GAERHGFLPLKEVAREYFTPGLDPNKANIRDLIKEGHEVVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALDHLTVPDDVGLIVRTAGLGRDAEELQ
WDLDYLLQLWKAISNAAQAQKAPFLIYQESKLFIRALRDYLRSDIGEILIDEESLYNDAR
EFMQQVMPTALRKLKMYRDDTPLFSRYQIETQIESAFDRQVRLPSGGSIVIDQTEALTAI
DINSSKATKGSDIEETAFNTNLEAAVEIARQLRIRDAGGLIVIDFIDMDSPKHQREVEER
LKDALKLDRARVQIGRISRFGLLEMSRQRLRPSLGEATQIVCPRCEGHGHVRGVESLALS
TLRLIEEHAMKDNTGQVLVQAPPSVANFMLNEKRASVVEIELRNKVHVVIVADDKLETPH
IEIQRIREADMGEHSKPSYERLTTVEASPLPKMGQTLGSSEQPAVSGIVPATPAPVREET
AAPAPQQTQQPRPTVAATPAPSGGVISRLLGWFRGSAAPATPAPAAKAEAAPANARGNRR
DDRNRQQPQQQSGRQQQQQRREQSQGQKGQQQGKGNRQRGNEQQAQQRQQQPSQAGRQEQ
KQPQQQAKAEPAQGQNERKQQQQRQDQQRQPRAAQAQPQQPAPAPVAAAQQPNERPAPVA
PTLAEASKEALAEVAAMPVVQTGVEAEAQPEGSPAAEGGQSRRRRGRRGGRRRRRHEEGA
QAGTEEIAGSDEHFDLDDEDRLEETTSHEPVAAPVAAAVIAATATTAAHAVKVEHASENP
APAFVVPSPVPAHVESAPEQVLSAVAPASFNLPALPPIPEKIESAQPEGITVEAAVESIT
HLESVSAHEVIAAVEEAASPLTADVTATATHAPEAATTVVEPGQQAEPIVASSTIDFRSH
LDIAPQAEQAQASVAEAVDTQPESPVAVEPANVPATPAQGDLLAHAGVASPADADMDEAA
SPESSSIEADGPKKDASHG
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgatcaacgcaactcagcgtgaagagttgcgtgtggccattgtcgat
ggccagaccctttacgatctcgatatcgaaatcccttcccgcgagcagaaaaaggccaat
atctataagggccgcatcactcgcgtcgaaccctccctcgaagcctgtttcgtcgattac
ggcgccgagcgccacggttttcttccgctgaaggaagtggcccgggagtatttcaccccc
ggcctcgaccccaacaaggcgaacatccgcgacctgatcaaggaaggtcacgaagtggtc
gtgcaggtcgagaaggaagaacgcggcaacaagggcgcggcgctgaccaccttcatcagc
ctcgccggccgctacatggtgctgatgccgaacaacccgaaagcgggtggcgtgtcgcgt
cgcatcgagggcgaagaccgccaggcgctgaaggaagcgctggaccatctcaccgtgccc
gacgacgtcggcctcatcgtgcgcaccgccggcctcggccgcgacgccgaagagctccag
tgggatctcgactacctgctgcagttgtggaaggcgatttccaacgctgcccaggcgcag
aaggcgccgttcctgatctaccaggaatccaagctgttcatccgcgccctgcgcgactac
ctgcgcagcgacatcggcgaaatcctcatcgacgaggagtcgctgtacaacgacgcgcgc
gagttcatgcagcaggtcatgcccacggccctgcgcaagctcaagatgtaccgcgacgac
accccgctgttctcgcgctaccagatcgaaacccagatcgagagcgcgttcgaccgtcag
gtccgcctgccctcgggcggttcgatcgtgatcgaccagaccgaagcccttaccgccatc
gacatcaactcgtcgaaggccaccaagggcagcgatatcgaagaaacggcgttcaacacc
aacctcgaagccgcggtcgagatcgcccgccagctccgcatccgcgacgccggcggcctg
atcgtgatcgacttcatcgacatggacagccccaagcaccagcgtgaagtggaagagcgt
ctcaaggacgcgctgaagctggaccgcgcccgcgtccagatcggtcgcatcagccgcttc
ggcctgctggagatgtcgcgccagcgtctgcgcccgagcttgggcgaagccacccagatc
gtctgcccgcgctgcgaaggccatggccacgtccgtggcgtggaatcgctggcgctgtcg
accctgcgactgatcgaagaacacgccatgaaggacaacaccggccaggtgctggtgcag
gcgccgccgagcgtggccaacttcatgctcaacgaaaagcgcgccagcgtggtcgagatc
gaactgcgcaataaagtgcacgtggtgatcgtggccgacgacaagctcgaaacgccgcac
atcgagatccagcgcatccgcgaagccgacatgggcgagcacagcaagcccagctacgag
cggcttaccacggtggaagcgtcgccgctgccgaagatgggccagaccctgggcagtagc
gagcagcccgccgtcagcggcatcgtgcctgccaccccagccccggtgcgcgaggaaaca
gccgcgcctgccccgcagcagacccagcagcctcgcccgaccgtggccgccacgcccgcc
ccgagcggtggcgtgatttcccgcctgcttggctggttccgtggcagcgcggctcccgcc
acgccggctcctgcggccaaggccgaggccgcccccgcaaacgcgcgtggcaaccgacgc
gacgatcgcaatcgccagcagccgcaacagcagtcaggccggcagcaacagcagcagcgc
cgcgagcagtctcagggccagaaaggccagcaacagggcaagggcaaccgccagcgcggc
aacgagcagcaagctcagcagcgccagcagcagccctcgcaggctggccgccaggagcag
aagcagccgcagcagcaggccaaggccgaacccgcccagggccagaacgagcgcaagcaa
cagcagcagcggcaggaccagcagcgccagccgcgcgcggctcaggcacagccccagcaa
cccgcgccggcacccgttgcagccgcccagcagcccaatgagcgtccggcaccggtagct
ccgaccctcgccgaagccagcaaggaagccttggccgaggtggcagccatgcctgtcgtg
caaaccggcgtagaagccgaagcgcagcccgaaggttcgccggctgccgaaggcgggcag
tcgcgtcgccgccgtggtcgtcgcggcggtcgtcgccgtcgtcgtcacgaggagggtgcg
caggcaggtaccgaggaaatcgccggcagcgacgagcatttcgacctggacgacgaggac
cgcctcgaggaaaccacatcgcacgaacccgtggctgccccggtcgcagcggccgttatc
gcagcgactgccaccaccgcagcgcatgcggtgaaggttgagcacgccagcgaaaatcct
gctccggcattcgtggtgccgtcgccggtccccgcacacgttgaatccgccccggaacag
gtgctgagcgccgtggcgcctgcatcgttcaacctgcctgcgttgccgccgattcccgag
aagatcgaatcggcccagccggaaggcattacggtggaagcggctgtcgaatcgatcacg
cacctggagtcggtctcggcccacgaagtgatcgccgcggtcgaagaagccgcttcgccc
ctgacggccgacgttacagccactgccacgcatgcccccgaagcggcaacgaccgttgtg
gaaccggggcagcaagcggaacctatcgtcgccagctcgaccatcgatttccgctcgcat
ctcgatatcgcgccgcaagcggagcaggcgcaggcatccgttgccgaggcagtcgatacc
cagccggaatcgccggtagcggtcgagccggcgaacgttccggcaacgcctgcccagggc
gatctgcttgcccacgccggcgtcgcctctcctgctgacgccgacatggacgaagcagcc
tcccctgagtcgtcgtcgatcgaggccgatggccccaagaaagacgcctcgcacggctga
DBGET
integrated database retrieval system
