Dyella jiangningensis: CH75_12165
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Entry
CH75_12165 CDS
T03074
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dji
Dyella jiangningensis
Pathway
dji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH75_12165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dji03019
]
CH75_12165
03016 Transfer RNA biogenesis [BR:
dji03016
]
CH75_12165
Enzymes [BR:
dji01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CH75_12165
Messenger RNA biogenesis [BR:
dji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH75_12165
Transfer RNA biogenesis [BR:
dji03016
]
Prokaryotic type
tRNA degradation factors
CH75_12165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AHX13864
LinkDB
All DBs
Position
complement(2626694..2629297)
Genome browser
AA seq
867 aa
AA seq
DB search
MTRKKEPRNRKQDAKSSPSAPKKGARRSALDPSKGRAGLMDDPHAEREAQRYERPIPSRE
AILALLESKGELLTEARIAESLSLRDEYELNALRKRLGAMVRDGQLLLGRRGGYAPANKL
DLIPGVVLANAEGYGFLRPDDGGDDLYLSPQQMRLVLHGDRVLASVVGIDRRGRKQGAIV
EVLQRRSPRLVGRVVLENGVMLVAPDDRRLHQDVMILPGQDLGARSGQIVVAEITQPPSA
HRGPLGAIRAVLGERLQPSLLVEMAIASYDLPHEWPNAVMREAAQVEPQVTAAEREGRTD
LRSLPLVTIDGADARDFDDAVYAEPRRGGGYRLVVAIADVSHYVPVGAELDKEAYERSTS
TYFPGFVVPMLPETLSNGICSLNPKVERLCMVCDMVVSAEGEVTKSKFYDAVMRSHARCT
YDRVWQAIGLNDADARHELADVMPHLEHLHGLYKLMAAQRKRRGAIDFETPEVKFRLDQR
GEVEAMGATERNDAHKLIEECMIAANVQAALFLEKKKIPALFRAHEPPPAEKYEDLQQFL
REFKLRMPPVEEVTPGDFADVLRLVHDRPERELIQSVLLRAQSMAAYQPDNRGHFGLALE
AYAHFTSPIRRYPDLLVHRAIRYAIAGGKPSGYSYTPTEMAAMAVHCSQRERRAEEAERD
VDERFKCAWMSKHVGSEFDGTVTGVTSFGLFVELDDSKVSGLVHISQLSNDYYHFDPVRH
LLKGERSGAQFRLGDHVRVQVLRASLEDRKIDFRLVSPRKEKAAEPSRGDRRYDYAGAGE
RYSLPQRGRKATERAATRDNAAPASTLPPLPPLEHKAAARAAGKSTEGKSVFAKVKSAAK
GKLKAAKEAASKATSSVRKTNNKKGKR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgaaaaaaagaaccacgcaaccgcaagcaggacgccaagagcagcccctccgcg
ccaaagaagggcgccaggcgctcggcgctcgacccgtcgaaaggacgggcgggcctgatg
gacgacccgcatgccgaacgcgaggcacaacgctacgaacgcccgatccccagccgcgag
gcgatcctcgccttgctggaatcgaagggcgaactgttgactgaagcgcgcatcgccgag
tcgctttccctccgcgacgaatacgaactcaatgccctgcgcaagcgcctcggtgcgatg
gtgcgcgacgggcagctgttgctgggccgccgcggtggctatgcgccggcaaacaaactg
gacctgattcccggcgtcgtgctcgcgaacgccgaaggctacggcttcctgcgccccgac
gatggtggcgacgacctctatctctcgccgcagcagatgcgcttggtgctgcatggtgac
cgtgtgctcgccagcgtggtcggcatcgaccggcgtggccgcaagcagggtgcgatcgtc
gaagtactgcagcgacggtcgccgcggctggtgggtcgtgtcgtgctggaaaacggcgta
atgctcgtcgcgcccgatgacaggcgcctgcatcaggacgtaatgatcctgcccgggcag
gacctgggcgcgcggtccggccagatcgtcgttgccgaaatcacgcagccgccgtcggcg
catcgcggtccgctcggcgccatccgcgccgtactcggcgaacgcctgcagccgtcgttg
ctggtggagatggcgatcgccagctacgaccttccgcacgagtggccgaacgccgtgatg
cgcgaagcggcgcaggtcgagccgcaggtgactgccgccgaacgcgaaggccgcaccgac
ctgcgctcgttgccgctggtgaccatcgatggcgcggatgcgagggacttcgacgacgcc
gtgtatgccgagccgcgtcgcggtggcggttaccgcctggtggttgcgattgccgacgtg
tctcattacgtgccggtgggggctgagctcgacaaggaagcctacgagcgcagcacgtcg
acctacttcccgggtttcgtggtgccgatgctgccggagacgctctccaacggcatctgc
tcgctgaatcccaaggtcgagcgcctgtgcatggtgtgcgacatggtggtcagtgccgaa
ggcgaggtgaccaagtcgaagttctacgacgccgtgatgcgctcgcacgcacgctgcacc
tacgaccgagtgtggcaggccatcggcctcaatgacgccgatgcgcgccacgagctggcc
gacgtcatgccgcacctggagcatctgcacggcctctacaaattgatggcggcgcagcgc
aagcgtcgcggcgcgatcgacttcgagacgcccgaggtcaagttccgcctcgaccagcgc
ggtgaggtggaggccatgggcgccaccgaacgcaacgacgcgcacaagctgatcgaggaa
tgcatgatcgctgcgaacgtgcaggcggcgctgttcctggagaagaagaagatcccggcg
ctgttccgcgcgcacgaaccgccgccggccgagaaatacgaggacctgcagcagttcctg
cgcgagttcaagctgcgcatgccgcccgtggaagaagtgacgccgggcgacttcgccgac
gtgcttcgcctcgtccacgaccgccccgaacgcgagctgatccagtcggtactgctgcgc
gcgcagagcatggcggcctaccagccggacaatcgcggccactttggtctcgccctggag
gcgtacgcacacttcacctcgccaattcgccgctatccggacctgctggtgcatcgcgcg
attcgctatgcgatcgcgggcggcaaaccctccggctacagctatacgcccaccgagatg
gcggcgatggcggtgcactgctcgcaacgcgagcgtcgtgccgaagaggccgagcgcgat
gtggacgagcgcttcaagtgcgcgtggatgtccaagcacgtcggcagcgaattcgatggc
acggtgaccggcgtcacgtcgttcggcctgttcgtcgagctggacgactcgaaggtgtcg
ggcctggtgcacatcagccagttgtccaacgactactaccacttcgatccggtgcgccac
ctgctgaagggcgaacgtagcggcgcgcagttccgcctgggcgatcacgtgcgtgtgcag
gtgctgcgcgcctcgctggaggatcgaaagatcgacttccggctagtgtcaccacgcaag
gaaaaggcagcggaaccgtcgcgtggcgaccgccgttacgactatgcgggcgcaggcgag
cgctattccttgccgcagcgcggacgcaaggcgacggaacgggccgccacgcgcgataat
gccgcccccgcgtcgacactgccgccgttgccaccgctggagcacaaggctgcagccagg
gccgccggcaagtcgacggaaggcaagagtgtgttcgccaaggtgaagtctgcggcgaag
ggcaagctcaaggccgcgaaggaagcggcttccaaggcgacctcctcggtccgcaagacg
aacaacaagaaaggtaagcgatga
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