Dyella jiangningensis: CH75_18270
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Entry
CH75_18270 CDS
T03074
Name
(GenBank) RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dji
Dyella jiangningensis
Brite
KEGG Orthology (KO) [BR:
dji00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dji03019
]
CH75_18270
Enzymes [BR:
dji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CH75_18270
Messenger RNA biogenesis [BR:
dji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CH75_18270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
CON_HrpB
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHX14929
LinkDB
All DBs
Position
complement(3954533..3957049)
Genome browser
AA seq
838 aa
AA seq
DB search
MSALPSFPITPLLPEIRASLAAHPRLVLEAPPGAGKTTQVPLALLDQSWLGEGKILMLEP
RRIAARAAAQFMARQLGEEVGHTVGYRIRFEAKVGKATRVEVVTEGILTRLIQDDPELTG
IGAILFDEFHERHLAGDLGAALALDVQGTLRPDLRLGVMSATLDGERIAQWLDAPRISSP
GRSFPVHVAYPPARVQESIEHHLARVVRQALQENPGDVLAFLPGRREIARTQAILESSLD
DDVEVVALHGELSLAEQQTALSPAEPGMRRVVLATNVAESSVTLPGIRSVVDSGLAREPR
FDPHSGFTRLETVNISQASADQRAGRAGRVAEGTAYRLWPQSKRLDPSRTAEIMQAELSG
LALELAAWGITAGSGVDLPWLDVPPAGALAQGRDLLTQLGGLATDGRITALGREMLELGA
TPRLGAAALRAAPELRALVADLLALMEARSPLRGEQARTDDFRARVNALHAWRDRHTAGA
RTGADAGALAAIEHASKGWRRRLDVRTAASGVPDSHAVGDLLLHAYPDRVARRDDSNPLR
YTLANGRGARLHESTALHGEPWLVALDIRFEARDSLMLAAAPLDPRVLERDYPSQFRRER
VLRWNDERQAVEAFEEQRYAAIVLDRRSVPVKPEDALPALLAAVRAKGIDTLPWSEHAHR
LRARMQALRAWMPELGLPDVSDAALLASLEDWLAPYLNGKRSLGALGTDELSQALGNLFD
YEQRRQLDAQVPESLTVPSGMNRRLEYAEGEPPVLAVKLQELFGLADTPRIAHGRIPVTL
HLLSPAGRPIQVTQDLKGFWERTYPEVKKELKGRYPRHPWPDDPWTAAPTHRAKPRGT
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcattgccttccttccccatcactccgctgctgccggagatccgcgcttcgctc
gccgcgcatccgcgcctggtgctggaggcgccgccgggcgcgggcaagaccacgcaggtg
ccgctcgccctgctcgaccagtcgtggctgggcgaggggaagatcctcatgctcgagcca
cggcgtatcgccgcgcgtgccgcggcccagttcatggcgcggcagctgggcgaagaggtg
ggtcacacggtcggctatcgcatccgcttcgaggccaaggtgggcaaggccacgcgcgtc
gaagtggtgaccgaaggcatcctcacgcggctgatccaggatgatccggaactcaccggc
atcggtgcgatcctgttcgacgaattccacgagcggcatctcgccggcgacctcggcgcc
gcgctggcgctcgacgtgcaaggcacgttgcggccggatctgcgcctcggggtgatgtct
gccacgctcgacggcgagcgcattgcgcagtggctggatgcgccgcgcatcagcagcccg
ggccgaagctttccggtgcatgtggcatatcccccggcgcgcgtgcaggagagcatcgaa
catcatctggcgcgcgtcgtgcgccaggccttgcaggaaaaccccggtgatgtccttgct
tttttgccgggtcggcgcgagatcgcgcgcacgcaagcgatactggaatcgtcgctcgac
gacgacgtcgaagtcgtcgcgctgcatggcgagctgtcgctggccgagcagcaaacggca
ttgagtccggccgaaccgggcatgcgccgggtcgtgctcgccaccaatgtcgccgaatcc
agcgtcaccttgccgggcatccgatcggtggtggacagcgggctcgcgcgcgaaccgcgc
ttcgacccgcactcgggtttcacgcggctggaaacggtgaacatttcgcaggcctccgcc
gaccagcgcgccggccgcgccggccgcgtggccgaaggcaccgcgtaccgcttgtggcca
cagagcaagcggctcgatccgtcgcgcaccgcggaaatcatgcaggccgagctgtccggc
ctcgcgcttgagctcgcggcgtggggcatcaccgcaggcagcggcgtcgaccttccttgg
ctggatgtaccgccagccggcgcactggcgcagggccgggatctgctcacgcagctcggc
gggctcgcgaccgatggacgcatcacggcactgggccgcgagatgctggaactgggcgcc
acgccgcgccttggtgcggcggcgctgcgtgccgccccggagctgcgcgcgctggtcgcg
gacctgctcgccttgatggaagcgcgctcgcccttgaggggcgagcaagcgcgcaccgat
gactttcgcgcacgcgtcaatgcactccacgcctggcgcgatcgccatacggccggcgcg
cgtacgggtgccgatgccggcgcattggcagcgatcgagcacgccagcaagggctggcgc
cgtcgacttgacgtgcgcaccgcagccagcggcgtgcccgacagccacgccgtgggcgac
ctgctgctgcacgcctaccccgatcgcgtcgcgcgccgcgacgacagcaatccgttgcgc
tacaccctcgctaacgggcgcggcgcgcgcctgcatgaaagcacggccttgcatggcgag
ccgtggctggtggcgctcgatattcgcttcgaagcgcgcgacagcctgatgctcgccgcc
gcgccgctcgatccgcgcgtgctggagcgcgactatccctcgcaatttcgccgcgagcgc
gtgctccgatggaacgacgagcggcaggcggtcgaagccttcgaagagcagcgttacgcc
gccatcgtgcttgatcgccgcagcgtgccggtcaaacccgaggacgcgttgcccgcattg
ctcgccgccgtgcgggcgaagggcatcgacaccctgccgtggagcgagcatgctcatcgc
ctgcgcgcccgcatgcaggcgctgcgggcatggatgccggagcttggcctgcccgacgtc
tcggacgccgcactgctggcatcactcgaagactggctggcgccgtacctcaacggcaag
cgcagcctgggcgccttgggcaccgacgaactctcgcaggccctgggcaacctgttcgac
tacgaacagcgtcgccagctcgatgcgcaggtgcccgagagcctcacggtgcccagcggc
atgaatcgccggctcgaatacgcggaaggcgagccaccggtgctggccgtgaagctgcag
gagttgttcggcctggccgacacgccgcgcatcgcccatggtcgcattccggtcacgctg
cacctgctgtcgccagccggccggcccatccaggtcacgcaggacctcaagggcttctgg
gagcgcacgtatcccgaagtgaagaaggaactcaaagggcgttatccgcgccatccctgg
ccggatgatccgtggacggcggcgcccacgcatcgcgccaagccgcgcggcacctga
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