Dermabacter jinjuensis: COP05_04215
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Entry
COP05_04215 CDS
T06191
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
djj
Dermabacter jinjuensis
Pathway
djj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
djj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COP05_04215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
djj03021
]
COP05_04215
03019 Messenger RNA biogenesis [BR:
djj03019
]
COP05_04215
Transcription machinery [BR:
djj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
COP05_04215
Messenger RNA biogenesis [BR:
djj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
COP05_04215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATH96382
LinkDB
All DBs
Position
920610..922466
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AA seq
618 aa
AA seq
DB search
MNDNYTDAAELSAKRLPELQAIATSMGIRGVRKLRKGELIEAIRTGKAPSAPAARAEKTS
PSDDAPAAPAPQSAETAQKPSRSRNRNEDQERGDAQDRNTESTGDTNERAERRRGERPRR
VEDIELPDSETTRDRRKGERPDRRERGNDKGRDTKQGDQKNRDGEGRRDGRNNRSGNDND
DNNNDRRSRRSRGRDRNRNRNRRDNDNNGEPQIHEDDVLVKVAGILDIRDNYAFVRTTGY
LPGPSDIYVSMNQVRKYGLRKGDAIVGQVKAPKDGEEQQRQQDFHHGGGGRGRGRNNNRH
SKFAALVSVDTVNGMTPEKAKARVEFNKLTPLYPDTRLRLENKATNFTPRIIDLVAPVGK
GQRGLIVAPPKAGKTIILQQVADAITQNNPEVHLMVVLVDERPEEVTDMQRTVKGEVIAS
TFDRPADDHTTVAELAIERAKRLVEMGRDVVVLLDSITRLGRAYNLAAPASGRILSGGVD
SSALYPPKRFFGAARNVENGGSLTILATALVDTGSKMDEVIFEEFKGTGNWELKLDRKLA
ERRIFPAVDVNASGTRREEELMGNEELAIMWKLRRVLGQLEQQQAIELLLERLKKSQSNS
EFLLAVSKTTPSVPRQSE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacaactacactgacgccgccgaactttcggcaaagaggctccctgagcttcag
gccatcgcgacttccatgggcatccgcggcgtgcgcaagctccgcaaaggcgagctgatc
gaggcaatccgtacgggcaaggcaccgtcggcccccgccgcgcgtgccgaaaagacgagc
ccctccgacgacgcgcccgcggctcccgctcctcagagcgctgagacggcacagaagccc
tcgcgctcccgcaatcgcaacgaggatcaggagcgcggcgatgcacaggaccgcaacacc
gagtccaccggtgataccaacgaacgcgcagagcgtcgccgcggcgagcgcccgcgccgg
gtcgaagacatcgagcttcccgattcagaaaccacgcgcgaccgccgcaagggggagcgc
cccgaccgccgcgagcgcggcaacgataaagggcgcgacaccaagcagggcgatcagaag
aatcgcgatggcgaaggccgccgcgacggtcgcaacaatcgctccggcaacgacaacgac
gacaacaacaacgatcgccgtagccgccgctcgcgcggacgagaccgcaaccgcaaccgc
aaccgtcgcgacaacgacaataacggcgagccgcagatccacgaagacgacgtcctcgtc
aaggtcgcgggcattctcgacattcgcgacaactacgcgtttgtgcgcacgaccggctac
ctgcccggcccgagcgacatttacgtgtcgatgaaccaggtgcgcaagtacggcctgcgc
aagggcgatgcgatcgtcggccaggtcaaggcgccgaaggacggcgaggaacagcagcgc
cagcaggatttccaccacggtggcggtggccgcgggcgcggacgcaacaacaaccgccac
tcgaagtttgcggcgctcgtaagcgtcgacaccgtcaacggaatgactcccgagaaggct
aaggcgcgcgtcgagttcaacaagctcacgccgctgtaccccgatacgcgccttcgtctc
gagaacaaggccacgaatttcacgccgcgcatcattgaccttgttgcccccgttggcaag
ggccagcgtggcctcatcgtcgcgcctccgaaggcgggtaagaccatcatcctccagcag
gtcgccgatgcgatcacgcagaacaaccccgaggttcacctcatggttgttctcgtggac
gagcgccccgaggaagtcaccgacatgcagcgcacggtcaagggcgaggtcatcgcctcg
accttcgatcgccccgccgacgaccacacgaccgtcgccgagctcgcgattgagcgcgcg
aagcgcctcgtggaaatggggcgcgacgtcgtcgtgctccttgactcgatcacgcgcctc
ggccgtgcctacaaccttgcggcgcccgcctcgggccggatcctttccggtggtgtcgat
tcctcggcgctttacccgcctaagcgtttctttggcgcggctcgcaacgtcgaaaatggc
ggctcgctcacgatcctcgccacagccctcgtggacacgggatcgaagatggacgaagtg
atcttcgaagagttcaagggcaccggcaactgggagctcaagctcgaccgcaagctcgct
gagcgccgcatcttcccggccgttgacgtcaatgcctcgggaacgcgtcgcgaagaagag
ctcatgggtaacgaggagctcgccatcatgtggaagcttcgccgcgtgctcggccagctc
gaacagcagcaggcgattgaacttcttctcgagcgcctcaagaagtcgcagtcgaacagc
gaattccttctcgccgtttcgaagacgaccccgagcgttcctcgccagagcgaatag
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