Dermabacter jinjuensis: COP05_04645
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Entry
COP05_04645 CDS
T06191
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
djj
Dermabacter jinjuensis
Pathway
djj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
djj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
COP05_04645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
djj03400
]
COP05_04645
Enzymes [BR:
djj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
COP05_04645
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
COP05_04645
DNA repair and recombination proteins [BR:
djj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
COP05_04645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ATH96458
LinkDB
All DBs
Position
1013251..1014213
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AA seq
320 aa
AA seq
DB search
MPELPEVEVVRRGLEPYMASRVIERVEVLDARSLKRHAGGEENFVRQLEGRRVRSVARRG
KFLWASLSDAGCAPSIPPPHGEALVMHLGMSGQLRVRDGAVSGAPQASEPHVSEGPAPDP
VTHLRIRLHMEGGARIDFVDQRIFGGMHVSPLIGTADARAGGEGTDLPLIPQSAAHIARD
VLDPFLDEDSLVRRIRTRKAPIKSVILDQSTLSGIGNIYADEGLWEARLHFARPAIGIST
RKVRELLRACRDVMHRALEVGGTSFDALYVNVDGRSGYFARSLKAYGKHGTPCPRCNRAL
VRAQFQNRSSHFCPYCQRLR
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagcttcccgaggttgaggtcgtccgtcgaggcctcgagccgtacatggcctcg
cgcgtgatcgaacgcgtcgaagtgctcgatgcgcgctcgctcaagcgccacgctggcggt
gaagagaatttcgtgcgtcagctcgagggacgccgcgttcgctcggttgcgaggcgaggg
aagttcctgtgggcgtcgctgtccgacgccggctgcgctccctcgattcctccgccgcac
ggcgaagcgctcgtcatgcatctgggcatgagtggccagcttcgtgttcgcgacggggca
gtgagtggggcgcctcaagcgtcggaaccgcacgtgagcgaggggcccgcgccggatccc
gtgacccaccttcgcattcgccttcacatggagggcggtgcgcgcatcgattttgtggat
cagcggatttttggcgggatgcacgtgagcccgctgatcggtacggccgatgctcgtgca
gggggcgagggcaccgatcttccgcttatcccgcaaagcgcggcccatattgcccgtgac
gtgctcgacccttttctcgatgaggactccctcgtgcgccgaatccgtacgcgcaaggcc
cccatcaaatccgtcatcctggatcaaagcaccctcagcgggatcgggaatatctacgct
gatgagggcctgtgggaggcgcggctgcatttcgcgcgccccgcgatcgggatctcgact
cgaaaggtcagggagcttctgcgggcctgccgcgatgtcatgcatcgcgccctcgaggtg
ggtggcacgagcttcgatgcgctatacgtgaacgtcgatggccgaagcggctatttcgct
cggtcactgaaggcctacggcaagcacggcaccccgtgcccgaggtgcaatcgtgccctc
gtacgggcgcaattccagaatcgctcgagccacttctgcccctattgccagcgtctgcgc
tag
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