Dermabacter jinjuensis: COP05_04810
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Entry
COP05_04810 CDS
T06191
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
djj
Dermabacter jinjuensis
Pathway
djj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
djj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COP05_04810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
djj03019
]
COP05_04810
03009 Ribosome biogenesis [BR:
djj03009
]
COP05_04810
Enzymes [BR:
djj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COP05_04810
Messenger RNA biogenesis [BR:
djj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
COP05_04810
Ribosome biogenesis [BR:
djj03009
]
Prokaryotic type
rRNA helicases
COP05_04810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Flavi_DEAD
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ATH96481
LinkDB
All DBs
Position
complement(1053924..1055822)
Genome browser
AA seq
632 aa
AA seq
DB search
MTTDNHNDTEIALENREEIAEALEMDGMAQAGTDAADGGTDTDAPEETSNDERMRFDELG
LPPELLAAVHDLGFTHPSPIQERAIPALLEGRSVLGVAQTGTGKTAAFGLPLLAEIRASN
RSTQGLVLAPTRELAMQVADAIQSFAAKLDGVNVVSVYGGAPYGPQERALERGAHVIVGT
PGRVIDHLKRGNIVLDDLSTLVLDEADEMLRMGFAEDVDEILGFAPKQKRMALFSATMPP
AIKRVAEEHMPDAVSVAVARQSTTVTSVDQKYAVVPFRHKTGALTRIVETTDADATIVFV
RTRSAAEEVGTALIARGIVAATISGDVPQKERERIVERLRDGSLTVLVATDVAARGLDVE
RIGLVVNFDIPSEPEAYVHRIGRTGRAGRTGQAITFVAPHEKRKLRNIERTTRQELEEVQ
IPSPLDVSRHKMKKVLSEVPARLEKGRLNLYYDLLNEFLSENNVSIEQVAAALGAMTVGD
DGPRASDDEFTGANFRDKGAKGDRGDRKDRGDRGDRNRGEKRSRRSSAGFTTYRIAVGKN
NGVRPQAIVGAIAGEGGLNGQDVGKIDLFPSFSLVELRDGVDEAALARIGRARVGGKPMR
IQVDQGPKKGGKFKTRKGKRFEDRGAKKSNRW
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgacaaccacaacgacacggaaatcgccctggaaaaccgcgaagaaatcgcg
gaagcgctcgaaatggatggcatggcgcaggccggtacagacgccgccgacggcggcacg
gatacagacgcccccgaagaaacaagcaacgacgagcgcatgcgcttcgatgaactcggc
cttccgccggagcttctcgcggccgtccacgacctcgggttcacgcatccctcccccatc
caagagcgcgccattcccgcactgctcgaagggcgaagcgtcctcggcgtcgcccagacc
ggtacgggtaaaaccgctgcgttcggtctgccgctgctcgctgaaatccgagcatcgaat
cgctctactcagggactcgttcttgccccaacgcgagagctcgccatgcaggtggccgat
gcaatccagtccttcgccgcgaagctcgatggtgtgaacgtcgtgagtgtgtatggcggc
gccccgtacggcccgcaggaaagagcgctcgagcgcggcgcccatgtcattgtcggcacg
cccgggcgcgtcatcgaccatctcaagcgcggcaatatcgtgctcgacgacctgtcgaca
ctcgtgctggacgaggccgatgaaatgctccgcatgggcttcgccgaggacgtcgacgaa
atcctcggtttcgccccgaagcagaagcgcatggcacttttcagcgcaaccatgcctccc
gcgattaagcgcgttgcggaggagcacatgcccgatgcggtcagcgtcgccgtcgcccga
cagtcgacgaccgtcacgagcgtcgaccagaagtacgcggtcgtgccgttccgccacaag
acgggcgccctcacccgcatcgttgagacgacggatgccgatgccacgatcgtgtttgtg
cgcacgcgtagcgcggccgaagaagtaggaacggcgctcattgctcgcggcatcgtggct
gcgaccatctcgggcgacgtcccacaaaaagagcgcgagcgtatcgtcgagcgcctgcgc
gacggttcactcacggtcctcgtcgcgaccgacgttgccgcccgaggtctagacgtcgaa
cgcatcggcctcgtggtcaattttgacattccctccgaaccggaggcatacgtccaccgc
atcggccgtaccggccgcgctggccgcaccgggcaggcgattactttcgtcgcacctcac
gaaaagcgaaagcttcgcaacatcgagcgcacgactcgtcaggaacttgaggaagtgcag
atcccctcaccgctcgacgtctcgcgccacaagatgaaaaaggtgctgagtgaggtaccc
gcgcgtctcgaaaagggacggctcaacctctactacgacctcctcaacgagttcttgagc
gaaaacaatgtctcgattgaacaggtagcagcggcgctcggcgcgatgacggtcggcgac
gacggcccacgcgcgagcgacgatgaattcacgggtgcaaacttccgcgataagggagcc
aagggcgatcgcggcgatcgcaaagatcgtggcgaccggggagatcgcaaccgcggcgag
aagcgctcacgccgctcgagtgccggcttcacgacctaccgcatcgcagtcggtaagaat
aacggcgtgcgcccgcaggcaatcgttggggcgatcgccggtgagggcggactcaatggt
caggatgtcggaaagatcgatctcttcccctcgttctcgctcgtcgagcttcgcgatggc
gtcgacgaagcagcgctcgcgcgcattggccgcgcacgcgtgggcggcaagccgatgcgc
attcaggtcgatcagggtccaaagaagggcggaaaattcaagacccgcaagggcaagcga
ttcgaggaccgcggcgcaaagaagtccaatcgctggtaa
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