Dermabacter jinjuensis: COP05_07270
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Entry
COP05_07270 CDS
T06191
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
djj
Dermabacter jinjuensis
Pathway
djj03420
Nucleotide excision repair
djj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
djj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COP05_07270
03430 Mismatch repair
COP05_07270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
djj03400
]
COP05_07270
Enzymes [BR:
djj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COP05_07270
DNA repair and recombination proteins [BR:
djj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
COP05_07270
MMR (mismatch excision repair)
Other MMR factors
COP05_07270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
ATH96905
LinkDB
All DBs
Position
complement(1592623..1595943)
Genome browser
AA seq
1106 aa
AA seq
DB search
MPAVSGGDVTNVRLGAREVARLLGQPEPTPEQVAVIESALAPALVVAGAGSGKTETMSAR
VVWLIANGLVEPRHVLGLTFTKKAAHELAERIDRRLSSLASAMRSAGIELPSTLAASTVH
LGGQSPRVATYNGFALDLVHEHALRIGIDPDFTVLPPAAAWQIAYDLVESWQGELPFDHS
SGSVASAVLSLSGALSDHLRTARDLDEYLRQIEVETMNLPLQSDGGRKRTSPASVKRLWR
VLEQRRALVPLLEAFAREKRERGAIDFSDQVSFAAAIAKASSEVREDARTQHRVVLLDEF
QDTSVAQLDLLASLFGTGHATCAVGDPNQAIYGWRGASAASLSAFVERWGSEDTPVRQYT
LSTSWRNDAALLKGANAISAPLAGSTAGVKVPTLAPRPGAGPGSITVAAHATEFDEARAI
AEWIREIRAAHEAESEALDEAPASAAVLVRSRARIPVLQSVLENAGLSVSVAGGDSLLAQ
REVSDVRALLEVVNDASRSDALVELLEGPRFRFAPADIAVLGEWRRVLERSDAARAARID
PAAAFTLVDAITSPPPVDFVSPAGQRLSVPARERLARLAQIVREVRGAQGLDIPDLVTVA
VRALGIDIALESDPDRDVSHALANIERLRAQAASYARTATAPSLSAFLAHLDVSEAEERG
LEAAPTRPRDSSAVVISTIHAAKGLEWDHVAIASLTEGTFPSYTSQSAAKPEGACEYPAP
REPGWINELSLATIPVELRGDSEILAELRWAEAETQVELDEFFEEFRLDSGKESLREERR
LMYVALTRARKSALLTYSAWGEGVSKPRRASRFADEIRALEGVAVVDMEGEVGEKNPLES
SPRLAAWPAKAHPREAAVKEAAAAVALARKSDVDALATPQPRPDLARFTEATRHVIASQR
AEREARRVRLPSRLSPSDLVALSGANADERVRELVRPMPRKPSASARLGTRFHSWVEETH
AHGALLDVEELSLDQDDDDVRESLQELKEKFDRSVFATMTPLALEVPVSLALEEAFLSGV
IDAVYPNPSGEGVWIVDWKTGRVPSGEELARKSLQLSVYRLAWHQKTGLPLNQIETKFHY
VQAERTIDITRHPSEAQLSRMLAALA
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgtttcaggaggagatgtgacgaatgtgcgcctgggcgcgcgcgaggtggcg
cgccttctcggccagcccgagccgacgcccgaacaggtggccgtcatcgaatctgctctc
gcccccgcgctcgtcgttgccggcgcgggaagcggcaaaaccgagacgatgtcggcgaga
gtcgtatggcttattgcaaacggccttgtcgaaccgcgccacgtgcttggactgacgttc
acgaagaaagcggcacacgagctcgccgagcgcatcgaccggcggctctcgagccttgcg
tccgccatgcgttcggcgggaatcgagctgccctcgacgcttgcggcgagcaccgttcac
ctcggtggccagtcgccgcgcgtggcgacctacaacggttttgcgctcgatcttgtgcac
gagcacgcgctgcgaataggcattgacccagacttcacggtgctcccgcccgcagcggcg
tggcagatcgcctacgatctcgtcgaatcatggcagggggaacttcccttcgatcattcg
agcgggtccgtggcctcggcggtgctctcgctttcgggggcgctcagcgatcaccttcgc
actgcgcgggacctcgatgagtatcttcgacagatcgaagtcgagacgatgaacctcccg
cttcaaagcgatggagggaggaaacgcacctctccagcgagcgtcaagaggctgtggcgc
gttctcgagcagcgacgagccctcgtgccgctcctcgaagcatttgctcgcgagaagcgc
gaacgaggtgcgatcgacttttccgatcaggtgagcttcgccgctgctattgcgaaggcg
agcagcgaggtgagagaggacgcacgcacccagcaccgcgtggttcttctcgacgaattc
caggacacctcggtcgcacagctcgacctactcgcgtcacttttcggcacggggcacgcg
acgtgtgccgtgggggatccgaaccaggcgatctacgggtggcgcggtgcctcggctgcg
tcactgtccgcgttcgtggagaggtgggggagcgaggacacaccagtacgccaatacacg
ctcagcacctcgtggcgcaacgacgcggccctgctcaagggggcaaacgcgatcagcgcc
ccgctcgcgggcagcacggctggggtgaaggttccgacgcttgccccgcgacccggcgca
ggcccgggctcgatcaccgtcgccgcacacgcgactgagttcgacgaggcccgcgccatc
gccgagtggatccgcgaaatccgtgccgcccatgaagccgagagcgaagcgctcgacgag
gcgccagcgagcgcggcagtcctcgtgcgttcgcgcgcgcggatcccggttctgcaatcc
gtgcttgaaaacgcagggctcagcgtgagcgtcgcgggcggcgattcactcctcgcccag
cgcgaagtgagcgatgtgcgcgcgctgctcgaagtcgtgaacgatgcctcgcgctccgat
gcgctcgttgaactgctcgaagggccgcgcttccgcttcgcgccggcagatatcgccgtg
ctcggtgagtggcgacgtgtgctcgaacgcagtgatgcggcgcgggcagctcgcattgat
ccggctgcggccttcacgctcgtcgatgccattacctcgccgcccccggttgatttcgtg
agccctgcgggccagcgcctcagcgtgcctgcccgcgaacgactcgcgaggctcgcgcaa
atcgtgagggaggtgcgcggcgcccaggggctcgatattccagacctcgtgacggtcgcc
gtgcgggccctcggcatcgatatcgcgctcgaatcagatccggatagggacgtatcacac
gcgctcgcgaacatcgagcggcttcgtgcgcaggcggcaagttacgcccgcacagccaca
gccccgagcctctcggcgtttctcgcgcatctcgacgtgtccgaggccgaggagcgtggt
cttgaagccgcgcccacccgcccacgcgactcgagcgcagtcgtgatctcgaccattcac
gccgcgaaaggactcgagtgggatcacgtggcgattgcctccctcaccgaggggaccttc
ccctcctacacgagccagagtgcagcaaaaccggagggagcgtgtgagtatcccgcgcct
agggagcccgggtggatcaacgaactttctctcgccacgatccccgttgaacttcgcggc
gatagcgagattctcgcggagcttcgctgggcagaggcagaaacccaggttgaactcgac
gaattcttcgaggagtttcgtctcgacagtgggaaagagagtctgcgagaggagcgccgc
ctcatgtatgttgcgctcacacgtgcgagaaagagcgctctgctcacgtattcggcatgg
ggcgagggagtctcaaagccgcgccgcgcctctcgcttcgccgatgagattcgcgcgctc
gagggcgtcgcggtcgttgacatggaaggcgaagtcggcgagaaaaacccgctcgaatcc
tctccgcgcctcgccgcatggcccgcgaaagcgcacccgcgagaagcagctgttaaggag
gcggcagcagccgtcgcgctcgcgcgcaagagtgacgtggatgctctcgccacgccccag
cctcgccccgacctggcgcgcttcaccgaagccacccgacacgtcatcgcgagtcagcgt
gccgagcgtgaagcacggcgcgtgcgcctcccgtcgcgcttaagcccctcggatctcgtg
gcgctctcgggcgcaaacgccgatgagcgcgtgagagaactcgtgcgaccgatgccgcga
aaaccctctgcgagtgcgcggctcggaacacggtttcactcgtgggtcgaggaaacccac
gctcacggcgccctgctcgatgtggaggaactctccctcgatcaggatgacgatgacgtc
cgcgagagcctccaggagctcaaggagaagttcgatcgctcagtgttcgccacgatgact
cccctcgcgctcgaagttccggtttcgctcgcgcttgaggaggcgtttctctccggcgtg
atcgatgccgtgtacccgaacccgtctggtgagggggtatggatcgtggactggaaaacg
ggccgtgtcccttcaggcgaggagctcgcgcgcaaatcgcttcaactctccgtataccgt
ctcgcctggcaccagaagaccggcctgccgctcaaccagattgagaccaagttccactac
gtccaagccgaacgcacgatcgacatcacgcgacacccgagcgaagcgcaactgagccgg
atgctcgccgcgctcgcgtag
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