Desulfurococcus amylolyticus 1221n: DKAM_1105
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Entry
DKAM_1105 CDS
T00817
Name
(GenBank) Putative transcription antitermination protein nusG
KO
K15172
transcription elongation factor SPT5
Organism
dka
Desulfurococcus amylolyticus 1221n
Pathway
dka03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dka00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
DKAM_1105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dka03021
]
DKAM_1105
03019 Messenger RNA biogenesis [BR:
dka03019
]
DKAM_1105
Transcription machinery [BR:
dka03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
DKAM_1105
RNA polymerase I system
DKAM_1105
Messenger RNA biogenesis [BR:
dka03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
DKAM_1105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spt5-NGN
KOW
SH3_KIN17_C
KOW2_Spt5
NusG
KOW4_SPT5
Motif
Other DBs
NCBI-ProteinID:
ACL11431
UniProt:
B8D5Q0
LinkDB
All DBs
Position
complement(1045918..1046409)
Genome browser
AA seq
163 aa
AA seq
DB search
MSESQESSGGAAKIYAVKTTLGRELDTALIIGMRIDEMRARGEETSIGSIIIPPNVRGYV
FIEVERLGELYKVISDIRYIKAGRPIKVSYEEFEKLLKPKPVIEELNVGDEVEITRGPFR
GMRARIAGIDRNKNMLTVNILEAAFTIPITIPGDYVKKISKGV
NT seq
492 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatcacaggagtccagtggaggtgcggcgaagatatacgcggtgaaaacaaca
ctgggcagagaactggatactgctttaattataggtatgaggatcgatgagatgcgggcg
aggggagaggaaaccagtattggaagcatcatcatacctccaaatgtaaggggctacgtg
ttcatcgaggttgagaggctaggcgaactctacaaggtcatctccgatatcaggtatatt
aaagccggtaggccgattaaggtgtcctacgaggaattcgagaagcttttgaagcctaaa
ccagttatagaggaacttaacgtgggtgatgaagtagagatcacgaggggcccgttcagg
ggtatgcgtgccaggatagcgggcatagatagaaataaaaacatgcttacagtgaatatt
ttagaggccgctttcacaatacctattacaataccaggtgattatgttaagaagataagt
aagggtgtgtag
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