Desulfurococcus amylolyticus 1221n: DKAM_1414
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Entry
DKAM_1414 CDS
T00817
Name
(GenBank) Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
dka
Desulfurococcus amylolyticus 1221n
Pathway
dka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKAM_1414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dka03019
]
DKAM_1414
Messenger RNA biogenesis [BR:
dka03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DKAM_1414
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DKAM_1414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_ribbon_RPB9
S1
Prok-RING_1
ECR1_N_2
FtrD-like
Auto_anti-p27
A2L_zn_ribbon
GerPE
DUF5816
Zn_ribbon_RRN7
C1_1
Motif
Other DBs
NCBI-ProteinID:
ACL11740
UniProt:
B8D6K9
LinkDB
All DBs
Position
1314537..1315082
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AA seq
181 aa
AA seq
DB search
MQEIVMPGEPLAVEEEALPLQGAYIDEKGLIRSQVFGLKVFDRYKKQVYVRQVKNIELIK
PGTIVEAYVEAVTDELAFLKIYSIEGQRVEASGIIHVSQASNEFTQSLLGAIRPGDFVKA
KVLNNSIPYQLTIKEPGLGVIEAYCSVCGSLLYKSNDKLVCNTCGNIEKRKTSLNYIHVS
R
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagatagtgatgcctggcgaaccacttgcagtagaggaggaggcactgcctctc
caaggtgcatacattgatgaaaagggcttgatcaggtcccaggtattcgggttaaaggtc
ttcgatagatataagaagcaagtatatgttagacaagtgaaaaacatagagttgattaag
ccgggaaccattgtcgaagcatatgtcgaggccgtgactgatgagctggcttttctaaag
atatatagtatagaagggcaaagagttgaagcctccgggattatacatgtatcgcaggca
tccaatgagtttacacagagccttctaggggccattagaccaggtgacttcgttaaggct
aaggtgctcaataattctataccataccaattaaccattaaggaaccaggattaggcgtt
atagaggcgtattgcagtgtatgcggctccctgctctacaagagcaatgataaattagtg
tgtaatacatgcgggaatattgagaaacgtaaaaccagtttaaactatatacacgtctca
aggtga
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