Dietzia kunjamensis: NHB83_05255
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Entry
NHB83_05255 CDS
T08346
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dkn
Dietzia kunjamensis
Pathway
dkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHB83_05255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dkn03019
]
NHB83_05255
03009 Ribosome biogenesis [BR:
dkn03009
]
NHB83_05255
Enzymes [BR:
dkn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NHB83_05255
Messenger RNA biogenesis [BR:
dkn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NHB83_05255
Ribosome biogenesis [BR:
dkn03009
]
Prokaryotic type
rRNA processing factors
NHB83_05255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Extensin_1
S1
HC2
Motif
Other DBs
NCBI-ProteinID:
USX46866
LinkDB
All DBs
Position
1122433..1126278
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AA seq
1281 aa
AA seq
DB search
MSDPNLTIDDINALPERMRAHAAARAVGMSSREFLAAMAGIGVEIKSAQSGVTREVLLDW
FTSRGQDTGTAPGAAPAGDTGAQAPAAEASANDAPARKAPADKAPVEKAPAKKAAAKRAA
KAPAGKTAEKTPTAEMPADPASAEATVAETTPAETPAETPAAESATGGTAATETAPAKKA
SGRKSPARKTTAEKTAEKATDAEKFASRSAEKSGTRTGTKSVQGSADDSAGTGGAGTSGR
NRPALPEIAIVTGEVGSEESGNRRRRSTATPSFSPLFLSPDEAPAQTQADTRSSDEPRGR
RGQGQTQTQGRARTETAPDTAPTPPAEDTQVEQGGQEQGSDDGRATDQSDSGDGGTRRRR
RGRRGRGRGRGEAGDDQNGENTGTESSDDGDQRGDDQRGSDQRGSDQRGSDQRDVAPDET
SGSDDGSSDARSDSAGETDDRSADDSDGQSGPGDADGDDSDDSGNGPSGSRRRRRRRRRS
GGSGSDDTQTSNDDPPQTEVHEREARRRSGRGGQGSGTSSDEVQGITGSTRLEAKRQRRR
DGREAGRRRQPILSESEFLARREAVDRVMVVREKQRGDGKGVMTQVGVLEDKVLVEHFVT
TESARSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGKARRIEQA
LKSGDMVLVQVTKDPIGQKGARLSTQISLAGRFLVYVPDGNSTGISRKLPDTERRRLKAI
LKEVVPEGSGVIIRTAAEGVSAEEIGRDVERLAAQWTEISEAAAKRTGSGAGTPVALYEE
PDLLVKVVRDLFNEDFSKLVIQGETSWDTVHDYVSRVAPEMTERVERYDNPDVDVFATYR
VDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKYTGSGGNLEETVTKNNLEAAEE
IVRQLRLRDVGGMVIIDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQLTR
KKLGTGLVEAFSTPCEHCQGRGLIVHADPLHTESHNADEPGGRRGRRKGGNGKGSGESEA
PAPKQAARKDGPAPAAHPAALAISRQHTEADADSGAEPNAQGDTRTDGGRDTDQGRDAAP
ETRAAGRADAGARGATAPEVVTAPAAEAPAAPAAEQTAEPTPGTAEPDSADAAGTTRPAR
RRRAARRATSSAPAPTTAAEDAAAAEVTDSPQSEAAVVAEAETVVEQVSTPGPDTAGPDT
AGPDTGPTGQAPGGRRPRRRSTRREAGAAGTDTAPQAAPADPVAKVEAAPLAEAPTSVVA
EPRTRPARRRATRTTTAPAGD
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggatccgaacctgacaatcgacgacatcaacgcgcttcccgagaggatgcgtgcg
cacgcggccgccagggccgtgggcatgagcagcagggaattcctggccgccatggccggg
atcggcgtggagatcaagagcgcccagtccggggtgacccgggaggtgctgctcgactgg
ttcaccagccgcgggcaggacacggggacggcgcccggtgccgcgccggcaggggacacc
ggtgcccaggcgccggcggccgaggcgtccgcgaacgacgcccccgcacggaaggccccg
gcggacaaggcgcctgtggaaaaggcccccgcgaagaaggccgccgccaagagggcggcc
aaggctcccgccggtaagaccgccgagaagacccccaccgcagagatgcccgccgacccg
gcgtcggctgaggcgaccgtcgctgagacgacgccggccgagactccggccgagacgcct
gctgcagagtcggcgacgggcgggacggcggcgacggagaccgctcccgcgaagaaggcg
tccggcaggaagagcccggcgcgcaagaccacagccgagaagaccgccgagaaggccacg
gatgcggagaagttcgcctcgaggtccgcggagaagtccggcacgaggaccgggacgaag
tccgtgcagggctccgcggacgactccgcagggaccgggggagccgggacgagcggtcgg
aaccgcccggcgctgcccgagatcgcgatcgtcaccggcgaggtggggtcggaggagtcg
ggcaaccgtcggcgtcggtccactgcgaccccgtcgttctctccgctgttcctctcgccc
gacgaggctcccgcgcagacgcaggcggacacccgctcaagcgacgagccccgcggccgc
cgcggccagggccagacccagacccagggccgggcccgcaccgagaccgcccccgacacc
gctcccacccctcccgccgaggacacgcaggtcgagcagggcgggcaggagcagggatcc
gacgacggccgcgccacggaccagtccgactccggtgacggcgggacccgtcgtcgccgt
cggggccgtcgtgggcgtgggcgcgggcgcggcgaggccggcgacgaccagaacggtgag
aacaccgggaccgagtcgtcggacgacggagaccagcgcggcgacgaccagcgcggcagc
gaccagcgcggcagcgaccagcgcggcagcgaccagcgcgacgtcgccccggacgagacc
tccggcagcgatgacgggagctccgacgctcgttccgattccgccggcgagaccgacgac
cggtccgccgacgactccgacgggcagtccggtccgggtgacgccgacggtgatgattcg
gacgactcggggaacggtccgtcgggttcgaggcgccgtcgccgtcgtcgtcgtcgcagt
gggggctccggctccgacgacacccagacgtccaacgatgacccgccccagaccgaggtc
cacgaacgcgaggcccgccgtcgctccggacgcgggggacagggctcgggtacgtcgtcc
gacgaggtccagggcatcaccggctccacgcggctcgaggccaagcgccagcgtcgccgc
gacggccgcgaggccggtcgtcgtcgccagccgatcctctccgagtccgagttcctcgcc
cgccgcgaggccgtggaccgcgtcatggtggtccgtgagaagcagcgcggcgacggcaag
ggcgtcatgacccaggtcggcgtgctcgaggacaaggtcctcgtggagcacttcgtcacc
accgaatcggcgcgttcgatggtcggtaacgtctacctcggccgtgtgcagaacgtgctg
cccagcatggaggcggcgttcgtcgacatcgggcgcggccgcaacggcgtcctgtacgcc
ggcgaggtcaactgggaggccgcggggctcggcggcaaggcccggcggatcgagcaggca
ctcaagtccggcgacatggtgctggtgcaggtcaccaaggacccgatcgggcagaagggt
gcccgcctgtccacgcagatctcgctggccgggcgcttcctcgtgtacgtaccggacggc
aactccaccggcatctcgcgcaagttgcccgacaccgagcgtcgccgcctcaaggcgatc
ctcaaggaggtcgtgccggagggctccggcgtgatcatccgcaccgccgccgagggcgtc
agcgcggaggagatcggccgcgacgtcgagcgcctggccgcccagtggaccgagatctcg
gaggcggccgccaagcgcaccggctccggggccggcacgcccgtggccctgtacgaggag
ccggacctgctggtcaaggtcgtccgcgacctgttcaacgaggacttctccaagctcgtc
atccagggcgagacgtcctgggacacggtgcacgactacgtctcgcgggtcgcgcccgag
atgacggagcgcgtggagcggtacgacaacccggatgtggacgtgttcgccacctaccgt
gtggacgagcagctggccaaggcgctcgaccgcaaggtgtggctgccctccggcggctcc
ctggtgatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggcaagtacacc
gggtccggcggcaacctcgaggagaccgtcaccaagaacaacctcgaggccgcggaggag
atcgtccgccagctgcgcctgcgcgacgtcggcgggatggtgatcatcgacttcatcgac
atggtgctcgagtccaaccgcgacctcgtgctgcggcgcctcaccgaggcgctggggcgc
gatcgcacccgccaccaggtctccgaggtcacgtcactggggctggtgcagctcacccgc
aagaagctcggtaccgggctggtcgaggcgttctccaccccgtgcgagcactgccagggc
cgcgggctgatcgtgcacgcggaccccctgcacaccgagtcgcacaacgccgacgagccc
ggtggccgccgcggccgtcgcaagggtggcaacggcaagggctcgggggagtccgaggcg
cccgcgcccaagcaggccgcgcgcaaggacggccccgcgccggccgcgcacccggccgcg
ctcgcgatctcacggcagcacaccgaggcagacgccgacagcggcgccgagccgaacgcc
cagggtgacacccgcaccgacgggggccgtgacaccgaccagggccgtgacgcggcgccc
gagacccgggcagccgggagagcggacgccggcgcccggggggccaccgcccccgaggtc
gtgaccgcgcccgcggcggaggcaccggccgctcccgccgcggagcagaccgccgagccg
acgccggggaccgccgagcccgactcggcggacgccgccgggaccacgcggccggcgcgt
cgccgccgggcagcgaggcgggccacgagcagtgctccggcgccgacgaccgcggccgag
gacgccgccgcggccgaggtgaccgactccccgcagtccgaggccgccgtggtggccgag
gcggagaccgtcgtggagcaggtctccaccccgggtcccgacactgcgggtccggacacg
gcgggtccggataccgggcccacgggtcaggccccgggcgggcgccgcccccgccggcgg
tccacccgccgcgaggctggcgccgccgggaccgacaccgcgccgcaggccgcaccggcc
gatccggtggcgaaggtcgaggccgcgcccctggcggaagcgcccacctcggtggtcgcc
gagccgcgcacgcggcccgcgaggcgacgtgccaccaggacgacgaccgcccccgcgggc
gactga
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