Dietzia kunjamensis: NHB83_09260
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Entry
NHB83_09260 CDS
T08346
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dkn
Dietzia kunjamensis
Pathway
dkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHB83_09260 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dkn03021
]
NHB83_09260 (rho)
03019 Messenger RNA biogenesis [BR:
dkn03019
]
NHB83_09260 (rho)
Transcription machinery [BR:
dkn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NHB83_09260 (rho)
Messenger RNA biogenesis [BR:
dkn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NHB83_09260 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USX47585
LinkDB
All DBs
Position
complement(1984290..1986239)
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AA seq
649 aa
AA seq
DB search
MRLNDLKSLAQQMGLKGLSGKRKGDLVAMIEGARGGRPAPAREPAPKTAPAPKNESPVSG
DAAATAEAAAENDPARDEKPGREGAIAAQTESGRRNRGDRAGGGAENSRGGSDDPDSGRQ
GDRPRREDGKRGGDQRQGRNQQNRDQQHRDQQGGRTDQANQGGDQGGNRDQQGGRGDQGN
QGGRNRDQQGGRGDQGNQGGNRNDQSDQGGGDNGPRGDGQNRDDDGGGRGRRSRRRRERN
RGGGRPSDGDTEVREDDVLQPVAGILDVLDNYAFVRTSGYLAGSNDVYVSMNMIRRHGLR
RGDAITGAVKMPRDGQNDGQGGGGQGGGKNRQKFNPLVRIDTVNGGPVDQVRNRPDFSKL
TPLYPNQRLRLETEKNIISTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNN
PECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQVAELAIERAKRLVEMGQD
VVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATA
MVETGSAGDTVIFEEFKGTGNAELKLDRRIAERRVFPAVDVGPSGTRKEELLMSPEEAGI
MHKLRRVLSGLDTHQAIDLLMSQLRKTNTNYEFLLQVAKTTPTLPQDEE
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgaacgacctcaagtcgctggcccagcagatgggcctcaaaggcctgtcgggt
aagcgcaagggcgacctcgtcgcgatgatcgagggcgcccggggtggcaggcccgcgccg
gcccgtgagcccgccccgaagaccgcgcccgccccgaagaacgagtccccggtgtccggt
gatgccgcggcgacggccgaagcggctgccgagaacgacccggcacgggacgagaagccc
gggcgggaaggggcgatcgctgcgcagaccgaatccggtcgacggaaccggggtgacagg
gccggtggcggtgcggagaactcccgcggtgggtcggatgacccggactccgggcgacag
ggggatcgcccccgtcgcgaggatggcaaacgcggcggcgaccagcggcaagggcgcaat
cagcagaaccgggaccagcagcaccgtgaccagcagggcggccgcaccgaccaggccaat
cagggcggcgaccagggtggtaaccgggaccagcaggggggccgtggcgaccagggcaac
cagggtggacggaaccgcgaccagcagggcggccgtggcgaccagggcaaccagggcggc
aaccgcaacgaccagtccgaccagggcggcggggacaacggcccccgcggcgacggccag
aaccgcgacgacgacggtggcggccggggtcgacgcagccgccggcgccgcgagcgcaac
cggggtgggggccgcccgtccgacggtgacaccgaggtgcgggaggacgacgtcctgcag
ccggtcgccggcatcctcgacgtgctcgacaactacgcgttcgtccggacgtccggatac
ctcgcgggatcgaacgacgtctacgtgtcgatgaacatgatccgtcggcacgggctccgt
cgcggcgacgcgatcaccggcgcggtgaagatgccacgtgatggccagaacgacggccag
ggcgggggtggccagggtggcggcaagaaccgccagaagttcaacccgctggtccggatc
gacacggtcaacggcgggccggtggaccaggtccgcaaccgcccggacttctccaagctc
accccgctgtaccccaatcagcggctgcggctcgagacggagaagaacatcatctccacc
cgcgtgatcgacctgatcatgccgatcggcaaggggcagcgcgcgctcatcgtctccccg
cccaaggcgggtaagacgacgatcctgcagaacatcgccaacgcgatcgccaccaacaac
ccggaatgccacctcatggtggtgctcgtcgacgagcgcccggaggaggtcaccgacatg
cagcggtcggtgaagggtgaggtgatcgcgtccaccttcgaccgcccgccgtctgaccac
acgcaggtcgccgagctcgccatcgagcgggccaagcgcctggtcgagatgggccaggac
gtcgtcgtcctcctcgactcgatcacccgactgggccgggcctacaacaactcctcgccc
gcgtcgggccgcatcctctccggtggcgtggactccaccgccctgtacccgcccaagcgg
ttcctcggtgcggcgcgcaacatcgagaacggcggctcgctcaccatcatcgccaccgcg
atggtggagaccggctcggccggcgacacggtgatcttcgaggagttcaagggcaccggt
aacgccgaactcaagctcgaccggcgcatcgccgagcggcgcgtcttcccggccgtcgac
gtgggcccatcggggacgcgcaaggaggagctgctcatgagccccgaggaggcgggcatc
atgcacaagctccgccgcgtcctgtcgggactggacacccaccaggccatcgacctgctc
atgtctcagctgcgcaagaccaacaccaactacgagttcctgctgcaggtggccaagacg
acgcccaccctgccgcaggacgaggagtga
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