Dietzia kunjamensis: NHB83_09330
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Entry
NHB83_09330 CDS
T08346
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dkn
Dietzia kunjamensis
Pathway
dkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHB83_09330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dkn03019
]
NHB83_09330
03009 Ribosome biogenesis [BR:
dkn03009
]
NHB83_09330
Enzymes [BR:
dkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NHB83_09330
Messenger RNA biogenesis [BR:
dkn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHB83_09330
Ribosome biogenesis [BR:
dkn03009
]
Prokaryotic type
rRNA helicases
NHB83_09330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
USX47586
LinkDB
All DBs
Position
complement(2004225..2006054)
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AA seq
609 aa
AA seq
DB search
MGLAPAVAQAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILSLIDP
AVKSPQALILAPTRELALQVAEACVTYSANMPQVNVLPIYGGQAYGIQLSGLRRGAQIIV
GTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPETTQVALFSATM
PAAIRRISQKYLTNPTEVKVASKTSTAPTITQRYVLVNHRDKLDALTRIFEVEDFDAMIL
FVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAARGLD
VPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGEALLFVTPRERRLLSQIERATRQPLTE
IQLPSVDDVNEMRMAKFAQSITESLEDPSIALFRRLVEEYASEHSVSMSDIAAALATQSR
NSDDFLMREPERPPRRDDRRERPARDFSDGPRPSRSGKNMGQYRIAVGKRNNVKPGSIMG
ALANEAGLRGGDIGRISIRFDHSIVELPADLPADQLNSMKGIRVGGSEIDIRPDSGAPSG
RPSSFRDDRGGKPRGGGPRRDDRGDRGDRGDRRGGRDEKRDDRGGFRRGDDDRRGGGFRG
RSGGGPDRH
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggggctggcccccgcggtcgcacaggcggtcagggacgtgggttacgaagtcccctcc
gccatccaggccgcgacgatcccgctggtcctcgaggggcgtgacgtggtcggcctggca
cagaccggcaccggtaagaccgccgcgttcgcgctgcccatcctgtcgctgatcgacccg
gcggtgaagagcccccaggccctcatcctggcgccgacccgagagctcgccctccaggtc
gccgaggcctgtgtcacgtactcggcgaacatgccgcaggtaaacgtcctgcccatctac
ggcgggcaggcctacggcatccagctctcggggctgcggcgcggtgcgcagatcatcgtc
ggcaccccggggcgtgtgatcgaccacctgaagaagggcacgttggacctgtcgggtctg
cggcacctcgtcctggacgaggccgacgagatgctcgcgatggggttccaggaggacgtc
gagcggatcctgtcggacaccccggagacgacccaggtggccctgttctcggcgaccatg
cccgccgccatccggcggatctcgcagaagtacctcaccaatccgaccgaggtgaaggtg
gcgtcgaagacgtcgaccgcgccgaccatcacgcagcgctacgtcctggtcaaccaccgg
gacaagctcgacgctctgacgaggatcttcgaggtcgaggacttcgacgcgatgatcctg
ttcgtccggacgaagtccgccaccgaggagctggcagagcgactccgtgcacgggggttc
tccgccgcgcccatcaacggcgacatcccgcagaacctgcgtgagcgcacgatcgaggcg
ctgaaggacggtcgcacggacatcctcgtcgccaccgacgtggccgcccggggtctcgac
gtcccccggatcagccatgtcgtcaactacgacatcccgcacgacaccgagtcctacatc
caccggatcggccggaccggtcgcgccggtaggagcggtgaggcgctgctcttcgtcacc
ccgcgcgagcgccggctcctctcccagatcgagcgggccacccgccaaccgttgaccgag
atccagctcccgagcgtggacgacgtcaacgagatgcggatggccaagttcgcacagtcg
atcaccgagagcctcgaggacccgagcatcgcgctcttccgccgactggtggaggagtac
gcctccgagcactcggtctcgatgtccgacatcgccgccgctctggcgacccagtcgcgg
aactcggacgacttcctcatgcgggagcccgagcgcccgccgcgccgggacgaccgtcgc
gagcggccggcacgcgacttctcggacgggccgcgtccgtcgcggtcggggaagaacatg
gggcagtaccggatcgccgtgggtaagcggaacaacgtcaagcccggctcgatcatgggc
gccctggccaacgaggccgggctccggggcggtgacatcggacgcatctcgatccggttc
gaccactcgatcgtcgagctgccggcggatctccccgcggaccagctcaactcgatgaag
ggaatccgggtcgggggttccgagatcgacatccgccccgactccggcgctccgtcgggt
cgtccgtcgtcgttccgggacgacaggggcggcaagccgcgtggcggcggaccccgtcgc
gatgaccgtggcgaccgaggtgaccgtggtgaccggcgcggcggccgtgacgagaagcgc
gacgaccgtgggggcttccgccgcggtgacgacgaccgccgcggtggcgggttccgcggg
cgttccggcgggggcccggaccgccactga
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