Dietzia kunjamensis: NHB83_10945
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Entry
NHB83_10945 CDS
T08346
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dkn
Dietzia kunjamensis
Pathway
dkn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NHB83_10945 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dkn03400
]
NHB83_10945 (mfd)
Enzymes [BR:
dkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NHB83_10945 (mfd)
DNA repair and recombination proteins [BR:
dkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NHB83_10945 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USX44784
LinkDB
All DBs
Position
complement(2346328..2350002)
Genome browser
AA seq
1224 aa
AA seq
DB search
MTTTATATTPATAALSGLAGAVLANPALADLRDGLDRDAAVVRAPEALRPFLVAAVAQRA
PLLVVTATERECEELADELSGLYDDEVAQFPSWETLPHERLSPAADTIGRRLEVLNSVLS
GRPPGIVVAAARSVVQPISPGAARREPMRLVKGAELDPTDLMVRLAEFAYLREDMVARRG
DVAVRGGIVDVFPTTADHPLRIEFDGDTIAEIREFSVADQRSLPDGEVESAVLFPCRELL
LDDAVRARAGELAAEHRANPTLAELLDSLAEGIPRDGMEALTSVLVPEDMTTLPMLMPAD
TRVVVCDPDKVRRRAADLASAGREFLEASWTAATMGGDAPVDSETLDLSGSGYRTFSAVR
SEATEAGRAWWQLVPPGFLTDPEDGAVITVPAGDPPAPRGKDSEMEAMFVRLRALVGGGG
RAAMVVPGHGTVARILERLSEAEVPATAATAGSEPASGLVSVYEAVLHGGFSLTTGAGAA
GVADDLVVVSETDLTGNRLGSTTRPKARHSKRRNQVDPLALKAGDWVVHDQHGIGKFVEM
VERQVRGGDGSSRREYLVIEYAPGKRGAAGDRLYVPMESLGQLSRYVGGEAPTLSKMGGA
DWQNTKRKARKAVREIATELVQLYAKRQSAPGRAFGPDTPWQREMEDAFPFTETVDQLTA
IEDVKGDMEKTAPMDRVVVGDVGYGKTEVAVRAAFKAVQDGTQVAVLVPTTLLAQQHLAT
FAERMTGFPVTIRGLSRFTSDAEARKILAGLADGTVDVVIGTHRLLATGVRWKNLGLVIV
DEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSLAGIREMSQILTPPEERLPVLT
YVGAHSDKHVAAAIRRELLREGQIFYVHNRVRTIDSTAAKIRDLVPEARVVVAHGQMGEE
QLEQTVGGFWNRDYDVLVCTTIVETGLDISNANTLIVDRSDQLGLSQMHQLRGRVGRSRE
RGYAYFLYDPEKPLTETAYDRLATIAQNNDLGAGMAVAMKDLELRGAGNVLGAEQSGHIA
GVGFDLYIRLVGEAVEAYRAIADGEKVEVEEEVGEIRIELPVDAYIPVEYVDGDRLRLEA
YRKLSQAREAADIDAVVEELLDRYGPLPVEARRVVSVSRLRLVAQKYRVREIVLAGSRLR
VGPLDLLDSQQMRLKRMYPAAQYRATQKTVLLPLPKAAGARAGAGGEKARDDEMLQYAAD
FLTAMAGDPEGSNPVIQPETVPAR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccaccgccaccgccaccactcccgcgaccgccgcactgtccggtctggcgggt
gcggtcctggccaacccggcgctggccgacctgcgcgacggtctggaccgcgacgcggcg
gtggtccgcgcgcccgaggcgctgcggccgttcctcgtcgccgccgtggcgcagcgtgcc
cccttgttggtggtgacggccacggagcgcgagtgtgaggaactggccgacgagctgtcg
gggctgtacgacgacgaggtcgcgcagttcccgagctgggagacgttgccgcacgagcgt
ctctcgccggcggcggacacgatcggtcgccggctcgaggtgctgaactcggtgttgtcg
gggcggcccccggggatcgtcgtggcggcggcgcggtcggtggtgcagccgatctcaccc
ggcgcggcccgccgggagccgatgcggctggtcaagggcgccgagctggaccccaccgac
ctcatggttcggctggccgagttcgcgtacctgcgtgaggacatggtcgcccggcgcggg
gacgtggcggtgcgcggcggcatcgtggacgtctttccgaccaccgcggaccacccgctg
cgcatcgagttcgacggcgacacgatcgccgagatccgcgagttctccgtggccgaccag
cgctccctgcccgacggcgaggtggagtccgcggtgctgttcccgtgccgcgagctcctg
ctcgacgatgccgtgagggcccgggcgggggagctggccgccgaacaccgtgccaacccg
acgctcgccgagctgctggactcgctggccgagggcatcccgcgcgacggcatggaggcc
ctgacctcggtgctcgtgccggaggacatgacgaccctgccgatgctcatgcccgccgac
acccgcgtggtggtgtgcgacccggacaaggtccgccgtcgcgccgccgacctggcctcc
gccggtcgggagttcctcgaggcctcgtggaccgcggccaccatgggcggcgacgccccc
gtggacagcgagacgctggacctgtccgggtcgggctaccgcaccttctccgccgtccgc
tccgaggccaccgaggcgggccgcgcgtggtggcagctcgtcccgcccgggttcctcacc
gatcccgaggacggcgcggtcatcaccgtccccgcaggcgacccgcccgccccgcgcggc
aaggactccgagatggaggccatgttcgtccggctccgcgcgctcgtcggcggcggcggc
cgggccgcgatggtcgtgcccggtcacggcaccgtcgcccgcatcctggaacgcctgtcc
gaggccgaggtccccgccacggccgcgacggcgggatccgagcccgcctccggactcgtg
tcggtctacgaggctgtcctgcacggcgggttctcgctcaccaccggcgctggcgccgcc
ggggtggccgatgacctcgtcgtcgtctccgaaacggacctcaccggcaaccgcctcggc
tccaccacccgccccaaggcccgccactccaagcgccgcaaccaggtcgacccgctggca
ctgaaggccggcgactgggtggtgcacgaccagcacggcatcggcaagttcgtggagatg
gtcgagcggcaggtgcgcggcggcgacggctcctcacggcgcgaatacctggtcatcgag
tacgcgcccggcaagcggggcgcggccggcgaccggctctacgtgcccatggagtcgctc
gggcagctcagccgctacgtcggcggcgaggccccgacgctgtccaagatgggcggcgcc
gactggcagaacaccaagcgcaaggcccgcaaggccgtccgcgagatcgccaccgagctg
gtgcagctgtacgccaagcggcagtccgcgcccgggcgcgccttcggccccgacaccccg
tggcaacgcgagatggaggacgcgttccccttcaccgagaccgtcgaccagctcacggcg
atcgaggacgtcaagggcgacatggagaagaccgcgcccatggaccgcgtggtggtgggc
gacgtcggctacggcaagaccgaggtcgccgtgcgcgccgcgttcaaggccgtgcaggac
ggcacccaggtcgcggtgctggtgccgaccacgctgctcgcgcagcagcacctggccacg
ttcgccgagcgcatgaccggcttccccgtgacgatccgtggactgagccgcttcacctcc
gacgccgaggccaggaagatcctcgccgggttggcggacgggacagtggacgtggtgatc
ggcacgcaccggctgctcgccacgggcgtgaggtggaagaacctcggcctggtgatcgtg
gacgaggagcagcgcttcggcgtggagcacaaagagcacatcacctccctgcgcacccac
gtggacgtgctcaccatgtccgccaccccgatcccgcgcaccctggagatgtcgctggcg
ggcatccgcgagatgagccagatcctcaccccgcccgaggagcgcctgccggtcctgacg
tacgtgggcgcgcactcggacaagcacgtcgccgccgccatccggcgcgagctgctgcgc
gaggggcagatcttctacgtccacaaccgcgtgcggaccatcgactccaccgccgcgaag
atccgcgacctggtgcccgaggcgcgcgtcgtggtggcgcacgggcagatgggggaggag
cagctcgagcagacggtcggcggcttctggaaccgcgactatgacgtgctggtgtgtacg
accatcgtcgagacgggcctggacatctccaacgccaacacgctcatcgtggaccgctcc
gaccagcttggcctgtcgcagatgcaccagctgcgaggccgcgtgggccggtcacgtgag
cgcgggtacgcctacttcctctacgacccggagaagccgctcaccgagaccgcgtacgac
cggctcgcgacgatcgcgcagaacaacgacctcggggccggtatggccgtggcgatgaag
gacctcgagctgcgcggcgccggcaacgtgttgggcgccgagcagtcggggcacatcgcg
ggcgtcgggttcgacctctacatccgtctcgtgggcgaggcggtggaggcctaccgcgcg
atcgccgacggggagaaggtcgaggtcgaggaggaggtcggcgagatccgcatcgagctg
cccgtcgacgcgtacatccccgtggagtacgtcgacggcgaccggctccggctggaggcg
taccgcaagctctcgcaggctcgggaggccgccgacatcgacgccgtggtcgaggaactg
ctcgaccggtacgggccactgcccgtcgaggcccgccgcgtggtgtccgtatcgcggctg
cgactggtcgcgcagaagtaccgggtgcgtgagatcgtcctggccggatcgcgcctgcgc
gtgggcccgctcgacctgctggactcgcagcagatgcggctcaagcgcatgtacccggcc
gcgcagtaccgggccacgcagaagaccgtgctgctcccgctgcccaaggccgcaggcgcg
cgtgcgggtgccggcggcgagaaggcgcgcgacgacgagatgctgcagtacgccgccgac
ttcctcaccgcgatggccggggatccggaggggtcgaacccggtgatccagccggagacg
gtgcccgcgcgatga
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