Dokdonella koreensis: I596_1503
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Entry
I596_1503 CDS
T04377
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dko
Dokdonella koreensis
Pathway
dko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I596_1503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dko03019
]
I596_1503
03400 DNA repair and recombination proteins [BR:
dko03400
]
I596_1503
Enzymes [BR:
dko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I596_1503
Messenger RNA biogenesis [BR:
dko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I596_1503
DNA repair and recombination proteins [BR:
dko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I596_1503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF6400
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
ANB17529
UniProt:
A0A160DT67
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All DBs
Position
1744398..1746281
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AA seq
627 aa
AA seq
DB search
MRSAPARGRCRARAPASPKGLSVSMPASALQVLNTVFGYPAFRGEQQAIIEHLAGGGDAL
VLMPTGGGKSLCYQIPALLRAGTAIVVSPLIALMQDQVEALRQFGVEAAYLNSSLDAQAQ
REVEQRFARGELKLLYVAPERLLSERCLDLIGSRTISLFAIDEAHCVSQWGHDFRPEYRQ
LTVLHERFPDVPRIALTATADAPTRTEIVERLGLAEASRFVASFDRPNIRYRVVEKDNAR
RQLKDFLEGHRGESGIVYCLSRRKVEETAAWLAGEGVRALAYHAGMEAAGRAANQQRFLR
EDGIVMVATIAFGMGIDKPDVRFVAHMDLPKSMEGYYQETGRAGRDGLPAEAWMTYGLAD
VVTLAQFIAQSESGEERKRVERAKLDALLGFAETTTCRRQRLLAYFGETPQGACGNCDNC
LDPPQNWDATVTVQKALSCVYRTGQRYGVGHLTAVLRGEADERAQALGHDRLSVFGIGTD
LDARQWRSVFRQLVAAGLLSTDEEGYGTLRLTATSREALRGECTVWLRRPPGRAERRSAG
RDGAARSRQSLDIAAHEAALWDALRDARARLAREQSVPAYVIFHDATLLAMLRERPQSLR
ELGAISGVGERKLARYGEAFLAVLTAA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagcgccccggcgcgcggccggtgccgcgcccgcgcgcccgcctccccgaaaggt
ctatccgtctcgatgcccgcttccgcgttgcaggtcctcaataccgttttcggctatccc
gcgtttcggggcgaacagcaggccatcatcgaacacctcgccggtggcggcgacgccctg
gtgctgatgccgaccggcggcggcaagtcgctgtgctaccagatcccggccctgctgcgc
gcgggcaccgcgatcgtcgtctcgccgctgatcgccttgatgcaggaccaggtcgaggcg
ctgcgccagttcggcgtcgaggccgcctatctcaattccagcctcgacgcgcaggcgcag
cgcgaggtcgagcaacggttcgcccgcggcgagctgaagctgctctacgtggcgccggag
cggctgctcagcgagcgctgcctggacctgatcggctcgcgcacgatctccctgttcgcg
atcgacgaggcgcactgcgtctcgcagtggggacacgatttccggcccgagtaccggcag
ctgaccgtgctgcacgagcgcttcccggacgtgccgcgcatcgcgctgacggccaccgcc
gatgcgccgacccgcaccgagatcgtcgagcggctgggcctggccgaggcgtcgcgcttc
gtcgccagcttcgaccgcccgaacatccgctaccgcgtggtcgagaaggacaacgcgcgc
cgccagctcaaggacttcctcgaaggccaccgcggcgagtccggcatcgtctactgcctg
tcgcgccgcaaggtcgaggagaccgcggcctggctggcgggcgagggcgtccgcgccctg
gcctaccacgccggcatggaggccgccgggcgggcggcgaaccagcagcgcttcctgcgc
gaggacggcatcgtcatggtcgcgacgatcgccttcggcatgggcatcgacaagccggac
gtgcgcttcgtcgcgcacatggacctgcccaagagcatggaaggctactaccaggagacc
ggccgcgccggtcgtgacggcctcccggccgaggcctggatgacctacggcctggccgac
gtggtgacgctggcgcagttcatcgcccagtccgaatcgggcgaggagcgcaaacgcgtg
gagcgcgccaagctcgacgcgctgctcggcttcgccgagaccaccacctgccggcgccag
cgcctgctcgcctacttcggcgagacgccgcagggcgcctgcggcaactgcgacaactgc
ctggacccgccgcagaactgggacgccacggtcaccgtgcagaaggcgctgtcgtgcgtc
taccgcaccggccagcgctacggcgtgggccatctgaccgcggtgctgcgcggcgaggcc
gacgagcgcgcgcaggcgctcggccacgaccggctgagcgtgttcggcatcggcaccgac
ctcgatgcgcgccaatggcgttcggtgttccggcaactggtggccgccggactgctgtcc
accgacgaggaaggctacggcacgctgcgcctgaccgcgaccagccgcgaggccctgcgc
ggcgagtgcacggtctggctgcggcgcccgcccggccgcgccgaacggcgttcggccggc
cgcgacggcgccgcccgctcgcgccagagcctggacatcgcggcgcacgaggcggcgctc
tgggatgcgctgcgcgacgcccgcgcacgcctggcgcgcgagcagagcgtgccggcctat
gtgatcttccacgacgccacgctgctggcgatgctgcgcgagcggccgcagtccctgcgc
gagctgggcgcgatcagcggcgtcggcgagcgcaagctggcgcgctacggcgaagcgttc
ctggcggtgctgaccgccgcctag
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