Dokdonella koreensis: I596_1628
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Entry
I596_1628 CDS
T04377
Name
(GenBank) Exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dko
Dokdonella koreensis
Pathway
dko03410
Base excision repair
dko03430
Mismatch repair
dko03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I596_1628
03430 Mismatch repair
I596_1628
03440 Homologous recombination
I596_1628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dko03400
]
I596_1628
DNA repair and recombination proteins [BR:
dko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
I596_1628
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
I596_1628
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I596_1628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ANB17652
UniProt:
A0A167GU69
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All DBs
Position
1876132..1877895
Genome browser
AA seq
587 aa
AA seq
DB search
MAPRAPAAAVSPLTIRRRPAGAASWGSAAGVHPVLERVYAARGIDDPEQVRYRLGAMASP
QALGGIETACRLLAEAMAQDRHICVVGDFDCDGATGTAVAIRGLRLLGAGRVDYRVPNRF
VHGYGLTPALVDTLAEPMPDLVVTVDSGIACLAGVAAAKARGMRVLVTDHHLPGPELPVA
DAIVNPNAPGDGFPSKALAGVGVMFYLLVALRGHLRAAGWFERTGRAEPDLACLLDLVAL
GTVADLVPLDYNNRLLVDAGLRRIRARRACAGILALLESAGREAATTAPADLGFAVAPRV
NAAGRLEDMALGIECLLTDDSGAARSMAERLAAINAERRELQANMLEQGEAFVERWTAER
GPEGLPLGLTLFEDDWHAGVVGLVASKLKDRLNRPVVACAPVLDGGEEVRGSARSIRGVH
VRDVLAEVDARHPGLIGRFGGHAMAAGLTLQRAAVPRFAAAFDAVIRERAAPELFEPVLL
SDGELAPGDFTGELAGQLRYAGPWGQGFAEPLFDGEFAVASWRVVAERHLGLSLRLPGRE
DPLNAIQFHGWSGEPPPARLRLAYRLVPDDYRGKGAVQLIVEHRQSV
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtggcgccgcgtgcgcccgctgcagcggtgagcccgctcacgatccgccgccggccggct
ggcgcggcctcctggggctcggcggccggcgtgcatccggtactggagcgcgtctacgcc
gcgcgcggcatcgacgatccggaacaggtccgctatcggctgggcgcgatggcgtcgccg
caggccttgggcggcatcgagacggcgtgccgcttgctggccgaggcgatggcccaggac
cggcacatctgcgtggtcggcgacttcgattgcgacggggcgaccggcaccgccgtcgcg
atccgcggactgcgcctgctcggtgccggtcgcgtggactaccgcgtcccgaaccgcttc
gtccacggctacggcctgacgccggcgctggtcgacacattggccgagccgatgccggac
ctggtcgtgaccgtcgacagcggcatcgcctgcctggcgggcgtcgcggcggcgaaggcg
cgcggcatgcgcgtgctggtcaccgatcatcacctgccgggcccggagctgccggtcgcc
gacgcgatcgtcaatcccaatgcccccggcgacggctttccgagcaaggcgctggcgggc
gtcggcgtgatgttctacctgctggtcgccctgcgcggccacctgcgcgccgccggctgg
ttcgagcgcaccgggcgggcggagcccgacctggcctgcctgctcgatctggtggcgctg
ggaacggtggccgacctggtgccgctcgactacaacaaccgcctgctggtcgatgccgga
ctgcggcggatccgcgcgcgccgcgcctgcgccggcatcctggcgctgctggaatcggcc
ggccgtgaagcggccaccaccgcacccgccgacctcggcttcgcggtcgcgccgcgcgtc
aacgccgccgggcggctggaggacatggcgctcgggatcgaatgcctgctgaccgacgat
tccggtgcggcgcgttcgatggccgaacgcctcgccgcgatcaacgccgagcgtcgcgag
ctgcaggccaacatgctcgagcagggcgaggccttcgtcgagcgctggaccgccgagcgc
gggcccgaaggactgccgctggggctgaccttgttcgaggacgactggcatgcgggcgtg
gtgggcctggtcgcctccaagctcaaggaccgcctgaaccggccggtcgtcgcctgcgcg
ccggtgctggacggcggcgaggaggtgcgcggttcggcccgttcgattcgcggcgtgcac
gtgcgcgatgtgctggcggaggtcgacgcgcgccatccgggcctgatcgggcgtttcggt
ggccacgcgatggccgccggactcaccctgcagcgtgccgccgtgccgcgcttcgccgcc
gccttcgatgccgtcatccgcgagcgcgcggcaccggagctgttcgagccggtcctgctc
agcgacggggaactggcgcccggagacttcaccggcgagctggccggccagttgcgctac
gcagggccttgggggcagggcttcgccgagccgctgttcgacggcgagttcgcggtggcc
agctggcgcgtcgtcgccgagcggcatctggggctgagcctgcggctgccgggacgcgag
gaccctctcaatgcgatccagttccacggctggagcggcgagccgccgcccgcgcgcctc
cggctcgcctatcggctggtgccggacgactaccgcgggaaaggggccgtgcagctgatc
gtggagcaccgccagtccgtgtga
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