Dokdonella koreensis: I596_2028
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Entry
I596_2028 CDS
T04377
Name
(GenBank) Exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dko
Dokdonella koreensis
Pathway
dko03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I596_2028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dko03400
]
I596_2028
Enzymes [BR:
dko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I596_2028
DNA repair and recombination proteins [BR:
dko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I596_2028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ANB18048
UniProt:
A0A160DUB4
LinkDB
All DBs
Position
complement(2317513..2321208)
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AA seq
1231 aa
AA seq
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MSAVEPLAPLDWRGMPLAGRVLIEASAGTGKTYHIGLIYLRLLLETGLGVEQILVATFTD
AAAQELRERLRLRLVQAQRILERIAAGQPLPVDDPLAEHLATLAVDAAKLRQCLRRIRLA
RADIDRAPISTIHALCQRIQRDHPLESGATFAGDPLVDEDSLAGECVEDFWRQRVLTAAE
DEPGIAGMLALGLDGLKHTVAVIRAAGPARLLAPPPPDLEALRAGLERLDDAQALQVPLR
HLLADADAIAWNGTRKAARAVIEGIAGAAQPSRYLVALDDTALARIAGDACATLQNKARR
LALDEQPCIRLLAATAQALRAAREHAVPALCAEAHAFCERELPLRARRRGVQTFSMLIDR
VYQRLCGADADARLADRLFEAFPAALVDEFQDTDRRQFAIFDRIYRDAAGAARGRLVMIG
DPKQAIYAFRGGDIAAYLDAGRSAGLRCSLATNHRSSGRLVAALNAFYAHTSGGFGTVPI
RYQPVRSADRSDGAAYTIDGRPAAAPLVFHRFRGEAVDERGRALQAQGRLEALALDDCAN
RIAELLGGDHAIDGRRVGPGDIAVLLSTHAEVAALRERLLARGVPCVGSGRGSVFESEAA
ADLERILGAVRDPGDAPAVRGALATRVLGADYARFAAWEADVPAFERELERFAAWREQVR
ERGVLALVGAILADQAPRLLAAADGERLVTDLRHLGELLAEQESAHHGLDGLLAWLAAMR
HDAGGDVEAADARRLRIESDAERVQLLTVHASKGLEYPLVFLPLAWRSRSRAAPSVLRFH
DAAGRLCMDLGSDRFAAHRLVHRREELEERLRLFYVALTRAKYAVHVYWLDHGRPRPGDE
DTGDAYDAAAIEVLVGEVLQALGHASAAPAGASVPAAGDAGPSDARERAALEALAAALPG
VAAEPPFAGPVPYYRTADTRVRRRAVQAPLPALRPPRWLHSFSGLLRSAATVAEPGAADE
AAVPAPDADAFAGDIEADDERLLALAALRGPRFGDAVHDLLEHAPPGRFWPAQRERLRDA
LGALGVGRTIDEAGLLDATGRMIDRVRSSDLGDGLRLDRLADSARVAEFEFQFPVHRVGM
AQLRALCVAHGESAAIPPTLDAVRLDGLMTGFADLVFEAGGRYHVLDYKTNWLGARLSRY
RGAGLDAAMADHHYGLQALLYTVALHRYLRQRIRDYAPERHLGESWYLFVRAIGLDDAAT
DLRHGVWRRRWPARLILALDAAFAGQPESVS
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcggtcgagccgctggccccgttggactggcgcggcatgccgctggccggccgc
gtgctgatcgaagccagcgccgggaccggcaagacctatcacatcggcctgatctacctg
cgcctgctgctcgagaccggcctgggcgtcgagcagatcctggtcgcgaccttcaccgac
gcggcggcgcaggagctgcgcgagcggctgcggctgcggctggtccaggcgcagcgcatc
ctggagcggatcgcggccggccagccgctgcccgtcgatgatccgctggccgagcatctg
gcgacgctggccgtcgatgcggccaagctgcgccagtgcctgcggcggatccggctggcg
cgtgcggacatcgatcgcgcgccgatctcgacgatccatgcgttgtgccagcgcatccag
cgcgaccacccgctcgagagcggtgcgacgttcgctggcgatccgctggtcgacgaggac
tcgctggcgggcgagtgcgtcgaggacttctggcggcagcgcgtgctgaccgcggcggag
gacgagccgggcatcgccggcatgctggcgctggggctggacggcctcaagcatacggtg
gcggtcatccgcgccgccggtccagcgcgcctgctggcgccgccaccgccggacctggag
gcgctgcgcgccgggctggagcgcctggacgatgcgcaggcgttgcaggtgccgttgcgg
cacctgctggccgacgccgatgcgatcgcctggaacggcaccaggaaggccgcccgtgcc
gtgatcgagggcatcgccggcgccgcgcagccgagccggtacctggtggcgctggacgac
acggcgctggcacgcatcgccggcgatgcctgcgcgaccttgcagaacaaggcacgccgg
ctcgccctggacgagcaaccgtgcatccggctgctggctgccaccgcccaggcgctgcgc
gccgcgcgcgagcacgcggttccggcgctgtgcgccgaggcgcatgcgttctgcgagcgc
gagctgccgctgcgcgcacgccgtcgcggcgtgcagaccttctcgatgctgatcgaccgg
gtgtaccagcggctctgcggcgccgatgcggacgcgcggctggccgaccggctgttcgag
gcattcccggccgccctggtcgacgagttccaggacaccgaccggcgccagttcgcgatc
ttcgaccgcatctatcgcgatgccgcgggcgcggcgcgcggcaggctggtgatgatcggc
gacccgaagcaggcgatctacgcgttccgtggcggcgacatcgccgcctacctggatgcc
ggccgcagcgccggcctgcgctgctcgctggcgaccaaccaccgttccagcggccgcctg
gtggcggcgctcaatgcgttctatgcgcacacctcggggggcttcggcaccgtgccgatc
cgctaccagccggtccgttccgccgacaggtccgacggcgccgcctacacgatcgacggc
cgcccggcggcggcaccgctggtgttccaccggttccgcggcgaggccgtcgacgagcgc
gggcgcgcattgcaggcgcagggccggctggaggcgctggcactggacgattgcgccaac
cgcatcgccgaactgctcggcggcgatcacgccatcgacggccgccgcgtggggccgggc
gacatcgccgtgctgctgtcgacccatgccgaggtggccgcgctgcgcgagcggctgctg
gcgcgcggcgtgccctgtgtcggcagcggccgcggcagcgtgttcgagagcgaggcggcg
gcggacctggaacgcatcctcggcgcggtccgcgatccgggcgacgcaccggcggtgcgc
ggcgcgctggcgacgcgcgtgctgggagccgactacgcccgcttcgccgcttgggaggcc
gacgtgccggcgttcgagcgcgagctggagcggttcgccgcctggcgcgagcaggttcgc
gagcgcggcgtcctggccctggtcggtgccatcctggcggaccaggcgccgcgcctgctg
gccgctgcggacggcgaacggctggtcacggacctgcgccacctcggcgagctgctggcc
gagcaggagagtgcgcaccacggcctggacgggctgctggcctggctggcggcgatgcgc
cacgacgccggcggcgatgtcgaggcggccgacgcgcgccgcctgcgcatcgagagcgat
gccgagcgcgtgcagctgctgaccgtccacgccagcaagggcctggagtacccgctggtg
ttcctgccgctggcctggcgttcgcgcagccgcgccgcgccgtcggtgctgcgcttccac
gacgccgccggccgcttgtgcatggacctcggctcggaccggttcgccgcgcatcggctg
gtgcaccggcgcgaggaactggaggagcgcctgcgcctgttctacgtcgcgctgacgcgc
gccaagtacgccgtgcatgtctactggctggatcacggcaggccacggcccggcgacgag
gacaccggggacgcgtatgacgcggcggcgatcgaggtcctggtcggcgaggtcctgcag
gcgctcgggcacgcatccgcggcgccggccggtgcgtccgtgccggccgccggcgacgcc
gggccgtccgatgcgcgcgagcgcgcggcgctcgaggcgctggctgcggccttgccgggc
gtggcggcggagccgccgttcgccggtccggtgccgtactaccgcacggccgatacccgg
gtgcgccggcgcgcggtgcaggcaccgttgccggccctgcggcccccgcgctggctgcac
agcttcagtggcctgctgcgcagcgcggcgacggtggcggagccgggcgctgcggacgaa
gccgctgtccccgcgccggatgccgatgcgttcgccggcgacatcgaggccgacgacgag
cgcctgctggcgctggcggccctgcgcgggccgcgtttcggcgatgccgtgcacgacctg
ctcgagcacgcgccgccggggcggttctggccggcccagcgcgagcggctgcgggacgcg
ctcggtgcgctcggggtggggcgtaccatcgatgaggccggcctgctcgacgcgaccggc
cggatgatcgaccgggtccggtcgagcgacctgggcgacgggttgcgcctggaccggctc
gccgattcggcgcgcgtggccgagttcgagttccagttcccggtgcaccgcgtcggcatg
gcgcagctgcgggcgctgtgcgtcgcccacggcgaatccgcggcgataccgccgacgctg
gatgcggtgcggctcgacggcctgatgaccggcttcgccgacctggtgttcgaggccggc
gggcgctatcacgtgctcgactacaagaccaactggctgggtgcgcgcctgtcgcgctat
cgcggcgccgggctcgacgcggcgatggccgatcaccactacggcctgcaggcgctgctc
tacaccgtggccctgcatcgctacctgcgccagcgcatccgcgactacgccccggagcgc
catctcggcgagagctggtacctgttcgtccgcgcgatcggcctggacgatgcggccacc
gacctgcgccacggcgtgtggcgccgccgctggccggcacggctgatcctcgcgctcgat
gcggcattcgccggccagccggagagcgtgtcgtga
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