Dokdonella koreensis: I596_2594
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Entry
I596_2594 CDS
T04377
Name
(GenBank) Ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dko
Dokdonella koreensis
Pathway
dko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I596_2594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dko03019
]
I596_2594
03009 Ribosome biogenesis [BR:
dko03009
]
I596_2594
Enzymes [BR:
dko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I596_2594
Messenger RNA biogenesis [BR:
dko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I596_2594
Ribosome biogenesis [BR:
dko03009
]
Prokaryotic type
rRNA processing factors
I596_2594
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
ANB18596
UniProt:
A0A167H2C5
LinkDB
All DBs
Position
2983303..2986368
Genome browser
AA seq
1021 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKSNIYKGRITRVEPSLEACFVEY
GGERHGFLPVKEISRQYFTPGVDHNKAGIRELLKEGQELLVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNNPRAGGVSRRIEGEDRQALKEALDHLSVPDEMGLIVRTAGMGRDAEELQ
WDLDYLLQLWKAISEAATTRHAPFLIYQESRLIIRALRDYLRNDIGEILIDSEELYSDAR
EFVQQVMPNNLRKLKLYKDTVPLFSRFQIETQIENAFERQVRLPSGGSIVIDQTEALTAV
DINSARSTKGGDIEETAFNTNCEAAVEIARQLRIRDAGGLIVIDFIDMDSPKHQREVEEK
LRDALKLDRARVQLGRISKFGLLEMSRQRLRPSLGESTQIVCPRCDGHGRIRGVESLSLS
ALRLVEEHAMKDSTGQVLVQAPSEVANFLLNEKRKQLAEIELRHDVAVIVVADEKLETPH
LEIQRIRASDIGEDNKPSYQRLTPVQPTELPQMARPSVEPEQPAVTRVVPAQPAPQREEA
EPVVVAPAPAPARPQAGGFLSRLVGWFRPAPDTAAAPPAKPAPKPAAAPAARNERGPKPP
AREARGAASTRPQGQGAAPRDRNGRPGASQPGRQQNERAQQRRPSESRPTSPAADKAPAA
AKPAATQPAAAAAAAVAATPAVATTLAGSPSTTAAAIDKPLPTQAPAGTTDATAPGSAAA
EGKTGEGRSRRRGRRGGRRNRKGAGSEVDMTATESSSDGIDFDDEDADHTTDTAPAPSPR
GATPPAQRSDASDTRTGTAASTFPAVKPASVPAAAAAAPAASRPAPAPVSAPVSAPVSAP
VSAPVSAPVSAPVPAPVSAPASAPVSAPVSAPVSAPVSAPVSAPVSAPASAPASAPASAP
ASAPASAPASAPASAPASAPASAPASAPASAPASAPASAPASAPASAPASAPASAPASAP
ASAPASAPASAPASAPASAPAPVSTTQTELPLSRPVAPASAPARSEQAPAANTPPARDSG
D
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttgatcaacgcaactcagcgtgaagagttgcgtgtggccatcgtcgat
ggccagaccctgtacgacctcgacatcgagatcccgtctcgcgagcagaagaagtccaac
atctacaagggtcgcatcacccgcgtggaaccctcgctggaggcctgcttcgtcgagtac
ggcggcgagcgccacggcttcctgccggtcaaggagatctcccggcagtacttcacgccc
ggcgtcgaccacaacaaggccggcatccgcgagctgctgaaggaaggccaggaactgctc
gttcaggtcgacaaggaggagcgcggcaacaagggcgcggcgctgacgaccttcatcagc
ctggccggccgctacatggtgctgatgcccaacaacccgcgcgccggcggcgtgtcgcgc
cggatcgagggcgaggaccggcaggcgctcaaggaagccctggaccacctcagcgtcccc
gacgagatgggcctgatcgtgcgcaccgcgggcatgggccgcgacgccgaagagctgcaa
tgggacctggactacctgctgcagctgtggaaggccatctccgaggccgccacgacgcgc
cacgcgccgttcctgatctaccaggagtcgcgcctgatcatccgcgcgctccgcgactac
ctgcgcaacgacatcggcgagatcctgatcgacagcgaggagctgtacagcgacgcgcgc
gagttcgtgcagcaggtcatgccgaacaacctgcgcaagctcaagctgtacaaggacacc
gtcccgctgttctcgcggttccagatcgagacgcagatcgagaacgccttcgagcgccag
gtgcggctgccgtccggcggatcgatcgtgatcgaccagaccgaggcgctgaccgcggtc
gacatcaactcggcgcgctcgaccaagggcggcgacatcgaggaaaccgcgttcaacacc
aactgcgaggccgcggtcgagatcgcccgccagctgcgcatccgcgacgcgggcggcctg
atcgtgatcgatttcatcgacatggacagccccaagcaccagcgtgaggtcgaggaaaag
ctgcgtgacgcgctcaagctcgatcgcgcccgcgtccagctcggccgcatctccaagttc
ggactgctggagatgtcgcgccagcgcctgcgcccgagcctcggcgaatcgacgcagatc
gtctgcccgcgctgcgacggccacggccgcatccgcggcgtcgagtcgctgtcgctgtcg
gcgctgcggctggtcgaggagcacgcgatgaaggacagcaccggccaggtgctggtgcag
gcgccttcggaagtcgccaatttcctgctgaacgagaagcgcaagcagctcgccgagatc
gagctgcgtcacgacgtggccgtcatcgtggtcgccgacgagaagctcgagacaccgcac
ctcgagatccagcgcatccgcgcctcggacatcggcgaggacaacaagcccagctaccag
cggctgaccccggtgcagccgaccgagctgccgcagatggcccgtcccagcgtcgagccg
gaacagcccgcggtcacgcgcgtcgtgccggcccagcccgcgccgcagcgcgaagaagcc
gagccggtggtcgtcgcgccggcgcccgcaccggcacgcccgcaggccggcggcttcctg
tcgcggctggtgggctggttccgcccggccccggataccgccgccgcgccgcccgccaag
ccggcccccaagcccgccgctgcccccgcggcacgcaatgagcgcggcccgaagccgccc
gcccgtgaagcccgcggcgccgcgtcgacccggccgcagggtcagggtgcggcgcctcgc
gatcgcaatggacggcccggtgcttcccagccgggacgccagcagaacgagcgcgcccag
cagcgccgcccgtccgagagccggcccacctcgccggcggccgacaaggcaccggcagcg
gcgaaacccgcagcgacgcagccggcagccgctgccgccgcggcggtggcagccacgcct
gcagtagccaccacgctggccggctcgccctcgaccaccgcggcagccatcgacaagccc
ctgccgacgcaggcgcccgccggcaccaccgatgccaccgcaccgggaagcgcagccgca
gaaggcaagaccggcgaaggccgttcgcgccgtcgtggccgtcgcggcggtcgccgcaac
cgcaagggcgccggcagcgaagtcgacatgacggcgaccgagtcgtcctccgacggcatc
gatttcgatgacgaggacgcggaccacaccaccgatacggcccctgcgccgtcgccgcgc
ggcgcgacgccgccggcgcagcgatccgacgcctccgacacgcgtaccgggacggccgcc
tcgacgttccccgcggtgaagccggcatcggtgccggccgcagccgcagcggcgcccgcc
gcgtcccgtccggctcctgctccggtctcggctccggtctcggctccggtctcggctccg
gtctcggctccggtctcggctccggtctcggctccggtcccggctccggtctcggctccg
gcctcggctccggtctcggctccggtctcggctccggtctcggctccggtctcggctccg
gtctcggctccggtctcggctccggcctcggctccggcctcggctccggcctcggctccg
gcctcggctccggcctcggctccggcctcggctccggcctcggctccggcctcggctccg
gcctcggctccggcctcggctccggcctcggctccggcctcggctccggcctcggctccg
gcctcggctccggcctcggctccggcctcggctccggcctcggctccggcctcggctccg
gcctcggctccggcctcggctccggcctcggctccggcctcggctccggcctcggctccg
gcccctgtttcgacgacgcaaaccgaactgccgttgtcccgtccggtcgctcccgcgtca
gcgccggcccggtccgaacaggcgccggcagcgaacacgccgccggcacgcgacagcggc
gactag
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