KEGG   Dokdonella koreensis: I596_263
Entry
I596_263          CDS       T04377                                 
Name
(GenBank) RNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
dko  Dokdonella koreensis
Brite
KEGG Orthology (KO) [BR:dko00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dko03016]
    I596_263
Enzymes [BR:dko01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     I596_263
Transfer RNA biogenesis [BR:dko03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    I596_263
 Prokaryotic type
   tRNA splicing ligases
    I596_263
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: ANB16302
UniProt: A0A167G9K0
LinkDB
Position
complement(318827..320050)
AA seq 407 aa
MRTQSRYELLHAEGSATPIKAWVRGVPVEDTAQRQLRNIAAIPFVGPWVAVMPDVHLGIG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRASDLPDNLASLRADIERDVPVGNGRD
GEHRRLPDSIATRVAGSNLAGRLEAIKAKHRRIRTDKLDRQIGTLGGGNHFIEICLDEAG
AVWVMLHSGSRGTGNLIGTYFIERAREELARRVLGFHLPDKDLAFFLEGEPLFDDYVEAV
SWAQDYARENREAMMTRVLAQMRRRLPAFQMDARAVNCHHNYVQKEVHGGQELLVTRKGA
VSARAGELGIIPGSMGTRSYIVRGKGNAESFHSCSHGAGRVMSRTAARQQITLAQHREAT
AHVECRKDKAVIDESPAAYKPIDAVIAAQDDLIEVVHTLRQVVCIKG
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgcgtacccaatcccgttacgaactgctgcacgccgaaggcagcgccacgccgatcaag
gcctgggtgcgcggcgtgccggtggaggacacggcgcagcgccagctgcgcaacatcgcc
gcgatcccgttcgtcgggccgtgggtggccgtgatgccggatgtgcacctgggcatcggc
gcgaccgtcggctcggtgatcccgacccgcggcgccatcatcccggccgcggtcggcgtc
gacatcggctgcggcatggccgccgtgcgcacgacgctgcgcgcatccgacctgcccgac
aacctggcatcgctgcgcgccgacatcgagcgcgacgtgccggtgggcaacggccgcgac
ggcgagcaccggcgcctgcccgacagcatcgccacgcgcgtcgccgggtcgaacctggcc
ggccggctggaggcgatcaaggccaagcaccggcgcatccgcaccgacaagctcgaccgc
cagatcggcacgctcggcggcggcaaccacttcatcgagatctgcctggacgaagccggc
gcggtctgggtgatgctgcactcgggctcgcgcggcaccggcaacctgatcggcacctac
ttcatcgaacgcgcccgcgaggaactggcgcggcgcgtgctcggcttccacctgccggac
aaggacctggccttcttcctggaaggcgagccgctgttcgacgactacgtcgaagccgtc
tcctgggcgcaggactacgcccgcgagaaccgcgaggcgatgatgacgcgggtgctggcg
cagatgcgccgccggctgccggcgttccagatggatgcgcgcgcggtcaactgccaccac
aactacgtgcagaaggaagtgcacggcggccaggaactgctggtgacgcgcaagggcgcg
gtcagcgcccgcgcgggcgagctcggcatcatccccggcagcatgggcacgcgcagctac
atcgtgcgcggcaagggcaacgccgagagcttccacagctgcagccacggcgccggccgc
gtgatgagccggaccgccgcgcgccagcagatcacgctggcgcagcaccgcgaggcgacc
gcgcacgtggaatgccgcaaggacaaggccgtgatcgacgagtcgccggcggcctacaag
ccgatcgacgcggtgatcgccgcgcaggacgacctgatcgaggtcgtgcacacgctgcgc
caggtggtgtgcatcaagggttga

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