Dokdonella koreensis: I596_3436
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Entry
I596_3436 CDS
T04377
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dko
Dokdonella koreensis
Pathway
dko03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I596_3436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dko03400
]
I596_3436
Enzymes [BR:
dko01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
I596_3436
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
I596_3436
DNA repair and recombination proteins [BR:
dko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
I596_3436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
ANB19425
UniProt:
A0A160DXH8
LinkDB
All DBs
Position
3939981..3940796
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETARRGLAPHLVGQRVDALDIRQPKLRWPIPPALREGLVGHRIEAVQRRAKYL
LVDTDAGSALLHLGMSGMLRVLPASTPIGPHDHVDWQLESGRVLRYTDPRRFGCQLWQPR
GETHPLLAHLGPEPLSDAFDGDLLWHRSRGRAAPVKLFVMDQAIVVGVGNIYASEALFAA
GIDPRQAAGRIARARYVRLADAVRRILAHAITRGGTTLRDFLNPDGAPGYFEQELFVYGR
EGQACRTCGTPIRGVRLGQRSTFYCPACQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcccgaagtggagaccgcgcggcgcggcctggcgccgcacctggtcggc
cagcgcgtcgacgccctggacatccgccagccgaagctgcgctggccgatcccccctgcc
ctgcgcgaagggctggtcggccaccggatcgaggcggtacagcggcgggcgaagtacctg
ctggtggataccgacgccggcagcgcgctgctgcacctcggcatgtcgggcatgttgcgc
gtcctgcccgcctccacgccgatcggcccacacgaccatgtcgactggcagctcgagtcc
ggccgcgtactgcgctacaccgacccgcgccggttcggctgccagctctggcagccgcgc
ggcgagacgcacccgctgctggcccacctcggtcccgagccgctgtccgacgcgttcgac
ggcgacctgctctggcaccggtcgcgcggccgcgcggcgccggtcaagctgttcgtgatg
gaccaggcgatcgtggtcggcgtcggcaacatctatgcgtccgaagcgctgttcgccgcg
ggcatcgacccgcggcaggcggccggcaggatcgcgcgtgcgcgctacgtccggctggcc
gacgcggtgcggcgaatccttgcgcatgcgatcacgcgcggcggcaccaccctgcgcgat
ttcctgaatcccgacggcgctcccggttacttcgagcaggaactgttcgtctatggccgc
gaaggccaggcctgccgcacctgcggcacgccgattcgcggcgtacggctgggccagcgc
agcacgttctactgtcccgcctgccagacgcgctga
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