Dokdonella koreensis: I596_906
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Entry
I596_906 CDS
T04377
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dko
Dokdonella koreensis
Pathway
dko03030
DNA replication
dko03430
Mismatch repair
dko03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I596_906
03430 Mismatch repair
I596_906
03440 Homologous recombination
I596_906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dko03032
]
I596_906
03400 DNA repair and recombination proteins [BR:
dko03400
]
I596_906
Enzymes [BR:
dko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I596_906
DNA replication proteins [BR:
dko03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I596_906
DNA repair and recombination proteins [BR:
dko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I596_906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
ANB16937
UniProt:
A0A160DRT9
LinkDB
All DBs
Position
complement(1075966..1079463)
Genome browser
AA seq
1165 aa
AA seq
DB search
MSSRFVHLHVHSEYSLVDSTVRIGDLVKACATLGMPAIAITDQVNLFALVKFQQAAERAG
IKPVAGSDVWIADPADRARPTRLTLLCRDRTGYLNLSRLVSRAWAEGRHGDLALIEPAWL
AQASAGLFALAGRESAVGRLLLAGNDKAATDALAELRHAFPERLYLEATRTQRAGEDDFI
AGALELAGRFDLPVVASNDVRFLEHEDFEAHEARVCIHGGRVLADPKRPRDYSAEQYLKA
PDAMAALFADLPGAVENTVELARRCNLQLAFGTYYLPAFPVPADETLDSWIRSQARDGLA
ARLAKQPPAPGFAEADYAQRLEREVDVIVQMGFPGYFLIVADFINWAKDHDIPVGPGRGS
GAGSLVAYALGITDLDPLRYGLLFERFLNPERVSMPDFDVDFCMDRRDEVIDYVARKYGR
DRVSQIITYGTMAAKAVLRDTGRVLGMPYGQVDRIAKLIPPRPLDLSLEDALGRTEKSRS
EPERVVGDFCTQYAEDEEVRELVDLALKLEDLTRNAGKHAGGVVIAPGPLTDFAPLYSED
GGAGVVTQFDKDDVEAIGLVKFDFLGLRTLTIIDWTVKAINRRRAAAGEPALDIMSVPLD
DPASYTLFARGDTVAVFQFESRGMQSLLKDAKPDRFEDLIALVSLYRPGPMELIPSFCAR
KHGRETIDYPDQRVEPILRETYGIMVYQEQVMQMAQIVGHYSLGGADLLRRAMGKKKAEE
MAKHRAIFREGAARDGIGEAKADAIFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKTHYA
AEFMAAVLSSDMDNTDKVVTFLDEARAIGLTVQPPDVNASAYMFEAADEKTIRYGLGAVK
GVGRGAVENIVEARGRGGPYRDLADFCLRVDPQKINKRVFEALILSGSMDALATNRASLM
AQLPAAIKAAEQHAHDLERGQGDIFGAAGPAAAAPVEQTEVDDWSLEQKLSGERETLGHY
LSGHPTDAWRDLLAKITTCPIGEIAAHYKPPAPGERRGRFNDQPFVLAGAVAGIRKAGDS
RAFVEVEDHSGRFTASLWSEVLVQYGALLTRDAILVFEGGLSVDDFSGGYQIRVQRVTTI
ASACEAQVRVVQVRLNGIGRDFVPRLRSALDPYRGGTTPVRLTVSNAGGQADIELGAQWR
VRAGPELQRALLGIDGVLAAQLLLG
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccgattcgtccacctgcacgtccacagcgagtactcgctggtcgactcgacc
gtccgcatcggcgacctggtcaaggcctgcgcgacgctgggcatgccggcgatcgcgatc
accgaccaggtcaacctgttcgcactggtcaagttccagcaggcggccgagcgcgccggc
atcaagccggtcgccggcagcgacgtgtggatcgccgatccggccgatcgcgcgcggccg
acgcgcctcaccctgctctgccgcgacaggaccggctatctcaatctctcgcgcctcgtg
tcgcgggcctgggccgaaggccggcacggcgacctggcactgatcgagccggcctggctg
gcacaggcgagtgccggcctgttcgccctggccggccgcgagagcgcggtcggccgcctg
ctgctggccggcaacgacaaggctgccaccgacgcgctggccgagctgcgccacgccttc
ccggagcgcctctacctggaggccacgcgcacccagcgtgcgggcgaggacgatttcatc
gccggcgcgctggaactggccggccgcttcgacctgccggtggtcgccagcaacgacgtg
cgcttcctcgagcacgaggacttcgaggcgcacgaggcgcgcgtgtgcatccacggcggc
cgcgtgctggccgaccccaagcgcccgcgcgactactcggccgagcagtacctgaaggcg
cccgacgcgatggcggcgctgttcgccgacctgcccggcgcggtcgagaacaccgtggag
ctggcgcggcgctgcaacctgcagctcgcgttcggcacctactacctgccggcgttcccg
gtgccggccgacgagacgctcgactcgtggatccggtcgcaggcccgcgacggcctggcc
gcccggctggccaagcagccgccggcgccgggcttcgccgaggccgactatgcgcagcgg
ctggagcgcgaagtcgacgtcatcgtgcagatgggcttccccggctacttcctgatcgtc
gccgacttcatcaactgggccaaggaccacgacatcccggtgggtccgggccgcggctcg
ggtgccggctcgctggtggcctatgcgctcggcatcaccgacctcgacccgttgcgctac
ggcctgctgttcgagcgtttcctgaatcccgaacgcgtgtcgatgcccgacttcgacgtc
gacttctgcatggaccggcgcgacgaggtgatcgactacgtggcccgcaagtacggccgc
gaccgggtcagccagatcatcacctacggcacgatggcggccaaggcggtgctgcgcgac
accggccgcgtgctcggcatgccctacggccaggtcgaccgcatcgccaagctgatcccg
ccgcggccgctggacctctcgctggaggacgcgctgggccgcaccgagaagtcgcgcagc
gaaccggagcgcgtggtcggcgacttctgcacgcagtacgccgaggacgaggaggtccgc
gagctggtggacctcgcgctcaagctcgaggacctgacccgcaacgccggcaagcacgcc
ggcggcgtcgtgatcgcgccgggaccgctgaccgatttcgccccgctctacagcgaagac
ggcggcgccggcgtggtgacccagttcgacaaggacgacgtcgaggcgatcggcctggtc
aagttcgacttcctcggcctgcgcacgctgacgatcatcgactggaccgtcaaggcgatc
aaccggcgccgcgccgccgccggcgagccggcgctggacatcatgtccgtgccgctggac
gacccggccagctacacgctgttcgcacgcggcgacaccgtggccgtgttccagttcgag
tcgcgcggcatgcagagcctgctcaaggacgccaagcccgaccggttcgaggacctgatc
gccctggtttcgctctaccggccggggccgatggagctgatcccgagcttctgcgcgcgc
aagcacggccgcgagaccatcgactaccccgaccagcgggtggagccgatcctgcgggag
acctacgggatcatggtctaccaggagcaggtgatgcagatggcccagatcgtgggccac
tactcgctcggcggcgccgacctgctgcgccgcgcgatgggcaagaagaaggccgaggaa
atggccaagcaccgcgcgatcttccgcgagggtgcggcccgcgacggcatcggcgaggcc
aaggccgacgcgatcttcgacctgatggagaagttcgccggctacggcttcaacaagtcg
cacgcggcggcctatgcgctggtctcgtaccagaccgcctggctcaagacgcactatgcc
gccgagttcatggccgcggtgctgtcctcggacatggacaacaccgacaaggtcgtcacc
ttcctcgacgaggcccgcgcgatcggcctgaccgtgcagccgccggacgtcaacgcctcg
gcctacatgttcgaggcggccgacgagaagacgatccgctacggcctcggcgcggtgaag
ggcgtcggccgcggcgcggtcgagaacatcgtcgaggcgcgcgggcgcggcggcccgtac
cgcgacctggccgatttctgcctgcgggtggatccgcagaagatcaacaagcgcgtcttc
gaggccctgatcctgtccggctcgatggacgcgctggcgaccaaccgggccagcctgatg
gcgcagctgccggcggcgatcaaggccgccgagcagcatgcgcacgacctggagcgcgga
cagggcgacatcttcggcgctgccggcccggccgccgcggcaccggtcgagcagaccgag
gtcgacgactggtcgctcgaacagaagctgtccggcgagcgcgagaccctcggccactac
ctgtccggccatcccaccgatgcctggcgcgacctgctggccaagatcacgacctgcccg
atcggcgagatcgccgcgcactacaagccgcccgcccccggcgagcggcgcgggcgcttc
aacgaccagccgttcgtgctggccggcgcggtggccggcatccgcaaggccggcgacagc
cgcgccttcgtcgaggtcgaggaccattcgggccggttcaccgccagcctctggagcgag
gtgctggtccagtacggcgccctgctgacgcgtgacgcgatcctggtcttcgaaggcggg
ctgtcggtcgacgacttcagcggcggctaccagatccgcgtgcagcgggtcacgacgatc
gcctcggcctgcgaggcccaggtgcgcgtcgtgcaggtgcgcctgaacggcatcggccgg
gatttcgtgccgcggctgcgttcggcgctggacccgtaccgcgggggcaccaccccggtg
cgcctgaccgtcagcaatgccggcggccaggccgacatcgagctgggcgcgcaatggcgc
gtgcgcgccggccccgagctgcagcgcgcgctgctcggcatcgacggcgtgctggcggcc
cagctgctgctcggctga
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