Desulfofundulus kuznetsovii: Desku_2523
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Entry
Desku_2523 CDS
T01499
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dku
Desulfofundulus kuznetsovii
Pathway
dku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desku_2523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dku03019
]
Desku_2523
Messenger RNA biogenesis [BR:
dku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desku_2523
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
PE-PPE
Motif
Other DBs
NCBI-ProteinID:
AEG16048
UniProt:
A0AAU8Q4J4
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Position
complement(2507140..2508804)
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AA seq
554 aa
AA seq
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MAKEPRLALIPLGGLGEIGKNMMAVRFGENILVIDCGLMFPEEEMLGIDVVIPDITYLLE
NKDAVRGIVLTHGHEDHIGALPYVLKQLNVPIYGTRLTLGLLQGKLKEQGLAGEANLQVV
KPRDTVTIGPFKVEFIRVSHSIPDAVAVAVHTPVGVIVHTGDFKIDQTPVDGEVTDFYRF
AQLGERGVLVLLSDSTNVERPGYTMSERVVGATFDETFRQAKERIIVASFASNVHRLQQA
ITTAHRYDRKVAVIGRSMINVINIAHELGYLHIPEGTLVELEEANRLPKNKVVFLCTGSQ
GEPMSALTRMALGDHRQVEILPGDTIIISAIPIPGNEKLVARIIDQLFKQGAHVIYEAVS
GIHVSGHPSQEELKLMINLVKPRFFVPVHGEYRMLIKHADLARSMGIPAENIFVAENGQV
LEFTRRSGRIAGRVTAGRVLVDGLGVGDVGNIVLRDRRQLSQDGILIVVVTINRELGQVM
AGPDIVSRGFVYVRESEQLMEEARQRVKEALEKCNDRGLSEWAAIKAQVRDVLGKFLYEK
TRRRPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggccaaggaaccaagactggctctgatccccctcgggggacttggtgagatcgggaaa
aacatgatggcggtgagattcggggaaaatattctggttatagactgcggtttaatgttt
ccggaggaagagatgttggggatcgacgtggtgatccccgatatcacttatctcctggaa
aataaagatgctgtgcgcggtatagtgcttacccacggacacgaggatcacatcggtgcc
ctgccttatgtacttaagcagttgaacgtgcccatctacgggaccaggcttaccctgggt
ttgctccagggtaagcttaaggaacaaggattggccggcgaggcaaatttgcaggtggtt
aagccccgggatacggtgacgatcggtccttttaaggtagaatttatccgggtgtcccac
agtattcctgatgcggtagccgtggccgttcacacgccggtgggagttattgtgcacacc
ggggactttaaaatcgatcaaaccccggtggacggagaggttaccgacttttatcgtttc
gcccaattaggggaacggggcgtgctggtgttgctgtctgacagcaccaacgtggagcgg
cccggctataccatgtcggaacgggttgttggggccacctttgatgagaccttccggcag
gctaaagaacgtattattgtagcctcctttgcttccaatgtgcaccgcttgcagcaggcc
attaccaccgcccaccgttacgaccgcaaggtggcggtgattggccgcagcatgattaat
gtgatcaatatagcccacgaactgggttaccttcatattcccgagggaaccctggtagaa
ctggaagaggccaaccgtctacctaaaaataaagtggtcttcttgtgtacgggcagccag
ggtgagcccatgtcagctcttaccaggatggccctgggggatcaccggcaggtggaaatt
cttcccggtgataccatcattatttccgccattcccattccaggcaacgaaaagctggtg
gcgcggattatcgatcaactgttcaagcagggtgcccatgttatctatgaggcggtttca
ggcattcatgtgagcggccaccccagccaggaagaacttaaactgatgatcaacctggtc
aagccccggtttttcgtgccggtgcatggtgagtaccgcatgttgatcaaacatgcggat
ctggcccgcagtatgggcattccagcggaaaatatttttgtggctgaaaacggccaggtg
ctggagtttacccggcgttccggtcgtattgccgggcgggtaacggccgggcgcgtgctg
gtggatggtttgggcgtgggtgatgtgggtaacattgtactgcgggaccgcaggcagctt
tcccaggacgggatcctgatcgtggtcgtgaccatcaatcgcgaattgggccaggttatg
gccgggccggatattgtttccaggggctttgtttatgtgcgggaatccgagcaattgatg
gaagaagcccggcaaagggtcaaggaggccctggaaaaatgcaacgatcggggtctttcg
gaatgggcggctattaaggcacaggtaagagacgtgttagggaagttcctctatgaaaaa
acaaggagaaggcccatgattttacccatcatcatggaagtatga
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