Desulfofundulus kuznetsovii: Desku_2535
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Entry
Desku_2535 CDS
T01499
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dku
Desulfofundulus kuznetsovii
Pathway
dku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desku_2535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dku03019
]
Desku_2535
03016 Transfer RNA biogenesis [BR:
dku03016
]
Desku_2535
Enzymes [BR:
dku01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Desku_2535
Messenger RNA biogenesis [BR:
dku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Desku_2535
Transfer RNA biogenesis [BR:
dku03016
]
Prokaryotic type
tRNA degradation factors
Desku_2535
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AEG16060
UniProt:
A0AAU8PRL9
LinkDB
All DBs
Position
complement(2520139..2522334)
Genome browser
AA seq
731 aa
AA seq
DB search
MSEKPILIKEIEIGGRCLKLETGRVAGQAGGAVLVRYGDTVVLVTATMSKTVREGIDFFP
LTVDYEERLYAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKGCRNEVQVVATIL
SVDQDNAPEIAAMIGASAALHISEIPFQGPIGGVIVGLVDGEYVINPTLAQAEKSLMHLV
VAGTRDAVMMVEAGAKEVPEDQILGGITFGHEKVKEIVEFIENFREEALALGLAKEKITP
VLAQVDPQVEEAVSGPAAEELTAAVRQCIERRLDKQAREAFLDEVKAKLVESFRETFPEQ
EQSILAVIEAVEKKIVRRFILEEGVRIDGRALDEIRPISVEAGILPRTHGSGLFTRGQTQ
VLSVVTLGAISDEQILDDLGIEEAKRFMHHYNFPPYSTGETRPMRSPGRREIGHGALAER
ALEPVIPGEDTFPYTIRLVSEVLSSNGSTSMGSVCGSCVALMDAGIPIKAPVAGVAMGLV
KEEDRVAILTDIQGIEDHLGDMDFKVAGTARGITALQMDIKIPGISADILEKALAQAREG
RLYILNKILEVIPAPRPELSPYAPRIIHTVIDPDKIREVIGPGGKVIKKIIDETGVEIDI
EDDGRVYIAAVDPAAAKRALEIIENITKDVVVGEIYTGKVTRVTDFGAFVEVVPGVFGMP
GKEGLVHISHLAHHRVNRVEDVVKEGDTIVVKAIGFDNQGRLKLSRKEALPPEPREAAPH
HRRPKGRQGRH
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaacctattttaattaaagaaattgaaatcggcggccgctgcctgaagctg
gaaacaggccgggtagccgggcaggccggtggggcagtcctggtacgctacggcgatacg
gtggtgctggttacagctaccatgtccaaaacggtgcgggaggggattgatttcttccct
ctcacggtggattacgaggaaaggctgtatgcagtgggaaaaatccccggcggtttcatt
aagcgtgagggccgtcccagcgaaaaggctattctttccggacgattgattgaccggccc
atacggcccctcttccccaagggctgccgcaacgaggtgcaggtggtggccaccattttg
tccgtcgaccaggacaatgctcctgaaatagccgccatgatcggagcatccgccgccctg
cacatcagtgaaattccatttcaaggccccattggcggtgtgattgtggggctggtggat
ggggaatatgtgatcaaccccacgctggctcaggcggaaaaaagtttaatgcacctggtg
gtggccggaacacgtgacgcggtgatgatggttgaagccggtgccaaggaggtgcccgaa
gaccagatattagggggaattacctttgggcacgaaaaagtgaaagaaatagttgagttc
atcgagaatttccgggaagaagccctggccctcggcctggccaaagagaagatcaccccc
gtcctggctcaggtggatccccaggtagaagaggcggttagcgggccggccgctgaggaa
ctgacggcggccgtgcggcagtgcattgagcggcggctggacaaacaggcccgggaagca
ttcctggatgaagtaaaggctaaactggtggaatccttccgggaaaccttccccgagcag
gaacaatccatcctggccgtcattgaggcggtagagaaaaagatcgtgcgccgtttcatc
ctggaggaaggagttcgcattgacgggcgcgctttagatgaaatacggcctatcagtgta
gaggcagggattctgccccgcacccacggctcaggacttttcacccgggggcagacgcag
gtgctttcggtggtcaccctgggcgccatttccgatgaacagattttagacgatctgggt
attgaggaagccaaacggtttatgcaccattataacttccccccctacagcaccggggaa
acacggcccatgcgttcccccgggcggcgggaaattggtcacggcgccctggcggaacgg
gcgttagagccggtgattcccggcgaggatactttcccctacaccatccgcctggtttcc
gaggttctttcttccaacggttccacctccatggggagcgtgtgcggaagttgcgtggcc
ctgatggatgcgggcatccccattaaagcaccggtggccggtgtggctatgggactggtt
aaggaggaggacagggttgccatcctcaccgatattcagggtatcgaagaccatctgggg
gatatggatttcaaggtggccggcacggccaggggaattaccgccctgcaaatggacatc
aaaattcccggcataagtgcggatattctcgaaaaggcgctggcccaggcccgggaggga
cgcctgtatattttaaacaagatcctggaggttattcctgcacccagaccggaattatca
ccctatgcgccccgaattattcatactgttatcgatcccgacaagatccgcgaagtcatc
ggtccgggcggcaaggtgatcaagaaaattatcgatgagacgggcgtggagatcgatatt
gaagacgacggccgggtttatatcgcggctgtagatcccgcggcggccaaacgggccctg
gagatcattgaaaatattaccaaagatgtggtggtcggcgagatttacaccggtaaagta
accagggtcaccgactttggtgcttttgtggaagtggtacccggtgtatttgggatgccg
ggcaaagagggactggtgcatatttcccacctggcccaccaccgggtgaaccgggtggaa
gatgtggtaaaagagggagacaccattgtggtgaaagccatcgggtttgacaaccagggg
cgtttgaagctttcccgcaaggaagccctgcccccggaacccagggaggcagcacctcat
caccggcgtcccaagggtcgccagggccgccactaa
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