Desulfofundulus kuznetsovii: Desku_3064
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Entry
Desku_3064 CDS
T01499
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dku
Desulfofundulus kuznetsovii
Pathway
dku03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desku_3064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dku03021
]
Desku_3064
03400 DNA repair and recombination proteins [BR:
dku03400
]
Desku_3064
Enzymes [BR:
dku01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desku_3064
Transcription machinery [BR:
dku03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desku_3064
DNA repair and recombination proteins [BR:
dku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desku_3064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Glutaredoxin
Motif
Other DBs
NCBI-ProteinID:
AEG16560
UniProt:
A0AAU8PES3
LinkDB
All DBs
Position
complement(3066960..3070469)
Genome browser
AA seq
1169 aa
AA seq
DB search
MLDLNNFDRIRIGLASSDMIRQWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHVWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVIDPGNTPLIKKQLLTETEYREYREKYGNAFKAGMGAEAIKELLA
EIDLDEMSRELRQELKEVSGQRRVRAIRRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKE
MALELFKPFVMKQLVNKGYAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSAHNIL
NPKDGRPVAIPTQDMVLGCYYLTMEKPGAPGEGKVFKDYEEAIMAYYNGAVSLQARVQVR
QPNGERLETTVGRIIFNEVVPDELGYLNTVMDKKSLVQLVDDCYRKLGYSATASMLDGIK
KLGFHFATRAGITISTSDIIIPPEKKEILADAEKQVETVETQYRRGLITEEERYRKIITI
WNEATDKVTKALLNILDKFNPVYMMANSGARGNIQQIRQLAGMRGLMADPSGRIIPVPIK
ANFREGLAVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREKDCGTNEGI
LVQEIKDGTEVIEKLEDRLVGRVALNDILHPGTGEVLVRAEEEIDEEKARAIVNAGIKEV
WIRSVITCKTRYGVCVKCYGRNLATGRMVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGV
AGDDITQGLPRVEELFEARRPKGQAVIAEADGVVDVREVKGRREVEITTDSGEKYTYQIP
YGARLKVSAGDRVAAGDELTEGSINPHDLLKIKGLHGVYTYLLHEVQRVYRLQGVDINDK
HIEVMIRQMLRKVRVEDPGDTDLLPGGVIDKFELEDENRRIREQGGREAVARPVLLGITK
ASLATDSFLSAASFQETTRVLTEAAIKGKVDPLIGLKENVIIGKLVPAGTGMSRYRNIQL
VEAGAEDRQEALESAGAAPANENIDNVRD
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatttgaacaactttgaccgcatccgcattggtctggcatcttcggacatgatc
cgccagtggtccagcggcgaggtaaaaaagccggaaacaattaactaccggacactgaag
ccggagcgggacggtcttttttgcgagcgcattttcggtcctaccagggactgggagtgc
cattgcggcaaatacaagcgggtacgctacaagggcgtggtttgcgatcgctgtggcgtg
gaggttacgcgctcgaaggtacgccgggaacgcctggggcatattgaactggccgccccc
gtgtcccacgtctggtattttaaaggcattcccagccgcatggggctgctcctggacatg
tcgccccgcgcgctggaaaaagtcctttactttgtttcgtatattgttatagatcccggc
aacactcccctgattaaaaaacagctgcttacggaaacggaataccgggagtaccgggag
aaatacggcaatgcctttaaggccgggatgggtgccgaggcgatcaaggagctcctggcc
gaaatcgatctggatgaaatgagccgggagctgcgccaggagctcaaggaggtcagcggt
cagcgccgggtgagggccattcgccgcctggaagtggtggaagctttccgcaaatccggc
aaccggcccgagtggatgatcctggatgtcatcccggtgattcctccggaactgcgcccc
atggtccagcttgacgggggccgctttgccacctcggatttaaatgacctgtaccggcgg
gtcatcaaccgcaacaaccggctgaagcgcctcctggatctgggggctcccgatattatc
gtccggaacgaaaagcgcatgctccaggaagcggtggatgccctcattgacaacggccgc
cgggggcgccccgttaccggcccgggcaaccggcccttgaagtccttaagcgatatgctc
aagggcaagcagggacgtttccgccagaacctcctgggtaagcgggtggactactccggc
cgttcggtgattgtggtcggccccaccttgaagctgcaccagtgcggcctgcccaaggaa
atggccctggagctgttcaagccctttgtgatgaagcagctggtgaacaagggctatgcc
cataacatcaagagcgccaagcgcatggtggagcgggtgcgtccggaagtttgggacgtc
ctggaagaggtgatcaaggagcacccggtgcttttgaaccgggctcccacgctgcaccgg
ctcggcatacaggcctttgagcccgtcctggtggagggccgggccatccagatccacccc
atggtctgtaccgcctataacgccgactttgacggcgaccagatggccgtgcacgtgccc
ctgtcggccgaggcccaggccgaagcccgtttgctcatgctttcggcccacaacatctta
aaccccaaggacggccgtcccgtggccattcccacacaggatatggtcctgggctgctac
tacctgaccatggaaaaacccggtgctcccggtgaggggaaggtcttcaaggattacgag
gaagccatcatggcctattataacggagccgtaagcctgcaggcccgggttcaggtgcgc
cagcccaacggggagcggctggaaaccaccgtgggcaggatcattttcaatgaagtggtc
cccgatgaactgggttatttaaacactgtgatggacaagaagagcctggtgcagctggtg
gacgactgttaccgcaagctggggtattcagccacggccagcatgctggacggcattaaa
aaactcggtttccattttgcgaccagggccgggattaccatcagtacttccgatatcatt
attcccccggagaaaaaggaaatcctggcggacgcggaaaagcaggtggaaacggtggaa
acccagtaccgccgggggttgatcaccgaggaggagcgctaccgcaagatcatcaccatc
tggaacgaggctaccgacaaggtaaccaaagccctgttgaatatcctggataaattcaat
cccgtgtacatgatggccaattccggggcccggggtaacatccagcagattcgccagctg
gccggtatgcggggactcatggccgacccctcgggccggatcatccccgtgcccattaaa
gccaacttccgggaagggttggccgtgctggaatactttatttccacccacggtgcccgc
aagggcctggccgataccgccctgcgcaccgccgactccggctacctgacccggcgcctg
gtggacgtggcccaggatgtcatcgtccgggagaaggactgcggcaccaacgaaggcatt
ctggtacaggaaatcaaggacggtacggaagtaattgaaaagctggaagaccgtctggtg
gggcgggtggccttgaacgatatcctccatcccgggaccggggaagtgctggtgcgggca
gaagaagagatcgacgaggaaaaggccagggccatcgttaacgccggcattaaggaagta
tggatccgttcggtgattacctgtaaaacccgttacggcgtgtgcgtgaagtgctacggc
cgcaacctggccaccggccgcatggtggacatcggcgaggccgtgggtattatcgcggcc
cagtccattggcgagccgggtacccagttgaccatgcgcaccttccacaccggcggcgtg
gccggggacgacatcacccagggtctgcccagggtggaggaactctttgaggcccggcgc
cccaaagggcaggcggtcattgccgaagccgacggtgtggtggacgtgcgggaggtcaag
ggacgccgggaggtggagatcaccaccgacagcggtgaaaaatacacctaccagattcct
tacggcgcccggctcaaggtcagtgccggggaccgggtggctgccggagatgagctgacc
gagggttccatcaacccccatgacctcttaaagatcaaggggttgcatggcgtctatacc
tacctgctgcatgaggtgcagcgtgtctaccgcctgcagggtgtggatatcaacgacaag
catatcgaagtgatgatccgccagatgctgcgcaaggtcagggtggaggaccccggggat
acggacctgcttcccggcggggtaatcgacaagtttgagctggaggacgaaaaccgccgg
atccgggaacagggcggcagggaagccgtggctcggccggtgctcctggggataaccaag
gcctccctggccaccgattcgttcctctcggctgcttccttccaggaaaccacccgggtg
ttgaccgaggcagccattaaaggtaaagtggatcccctgatcgggctgaaggaaaacgta
atcatcggcaagctggtgcctgcgggtacgggcatgagccgataccgcaatattcagctg
gtggaagccggggccgaagaccggcaggaagcgctcgagtctgcaggtgccgcgcctgct
aacgaaaatattgacaacgttcgtgactga
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