Desulfofundulus kuznetsovii: Desku_3458
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Entry
Desku_3458 CDS
T01499
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dku
Desulfofundulus kuznetsovii
Pathway
dku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desku_3458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dku03021
]
Desku_3458
03019 Messenger RNA biogenesis [BR:
dku03019
]
Desku_3458
Transcription machinery [BR:
dku03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Desku_3458
Messenger RNA biogenesis [BR:
dku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Desku_3458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
NACHT
ATPase_2
AAA_25
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AEG16938
UniProt:
A0AAU8PFR5
LinkDB
All DBs
Position
complement(3484560..3485876)
Genome browser
AA seq
438 aa
AA seq
DB search
MNYSELEGKTMQELYKIARELELTGYSRLRKRELIFEIIKAQTEKNGLIYAQGVLEILPD
GYGFLRPFQYLPSHDDIYVSSSQIRRFDLRTGDLVAGQVRGPKENERYYALLRVEQVNGV
DPEKAVERLHFDGLTPLYPQERIRLETQPDRVATRIIDLVAPIGKGQRGLIVAPPKAGKT
MLLKEIANSITQNHPEIYLIVLLIDERPEEVTDIERSVDGEVVSSTFDEPPENHVKVAEM
VLERAKRLVEHKQDVVILLDSITRLARAHNLVIPPSGRTLSGGVDPAALHKPKRFFGAAR
NLEEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELILDRRLAERRLFPAIDVQRSGT
RKEELLLSRDELEWIWFFRKATVGMAPWEAMEMLVERMKKNKTNEELLRLFRTARKSGPV
VPPDRPPDVRRDITPEGQ
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
gtgaattattcggaactagaaggcaaaaccatgcaggaactgtacaaaatagcccgggaa
ctggagcttaccgggtattcccgcctgcgcaagcgggaactgatttttgaaatcattaaa
gcccagacggaaaaaaacgggctcatctacgcccagggggtgctggagatactccccgac
ggctacgggttcctgcggcccttccagtacctgcccagccacgatgatatctacgtgtct
tcctcccagatccgccggttcgacctgcgcaccggcgacctcgtagccggacaggtgcgc
gggcccaaggaaaacgagcgctactatgcccttttgcgtgtggaacaggttaacggcgtc
gatccggagaaagccgtcgagagattgcatttcgacggcctcacccctctctacccccag
gagcggatccgcctggagacccagcctgacagggttgccaccaggattatcgacctggtt
gcccccatcggcaaaggacagcggggtttgattgtggcgccgcccaaagcaggcaaaacc
atgcttttaaaagaaattgccaacagcattacccagaatcatcctgaaatttacctcatc
gtgctccttattgacgaacggccggaggaagtcaccgatatcgaacgttcggttgacggg
gaagtggtgagttccacctttgacgagccgccggaaaaccatgtaaaagtggcggaaatg
gtgctggaacgggccaagcgcctggtggaacacaagcaggatgtggtgatcctgctggac
agcatcacccggttggcccgggcgcataacctggtgatcccccccagcgggcgtaccctg
tccgggggcgtggatccggcggcgctccataagcccaagcggttcttcggtgccgcccgc
aacctggaggaagggggtagcctgaccattctggccaccgccctcattgaaacgggcagc
cggatggacgacgtgatctttgaagagttcaaaggtacggggaatatggagctgattttg
gaccgccgcctggcggaacggcgcctgttcccggccattgatgtgcagcgttccggcacg
cgcaaggaagaattgctgctgtcccgggatgaactggagtggatctggtttttccgcaag
gcaaccgtgggcatggccccctgggaggccatggagatgctcgtggagcgcatgaaaaaa
aacaaaaccaacgaagaactcctgcgcctcttccgtactgcccgcaagagcggcccggtg
gttccccccgacagaccccccgatgtgcgccgggacattacccccgaaggccagtga
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