KEGG   Delftia lacustris: I6G47_23295
Entry
I6G47_23295       CDS       T06974                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dla  Delftia lacustris
Pathway
dla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    I6G47_23295 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dla03400]
    I6G47_23295 (ligD)
Enzymes [BR:dla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I6G47_23295 (ligD)
DNA repair and recombination proteins [BR:dla03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I6G47_23295 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N Exo_endo_phos DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QPS79914
UniProt: A0A1H3TZL0
LinkDB
Position
5007412..5010825
AA seq 1137 aa
MRVATWNVNNVNKRVALLVDWLQRTQPDVVALQEIKCPTADFPTAALQEAGYSSLVVGQR
TWNGVAILSRNADPLPIVTALPGDSTDKEARYLEAAITGILFACLYLPNGNPQPGPKFDY
KLRWFERLRRRTEELWHSGHPVVLLGDWNVVPTDADIYKPDTWRDDALLQPEARAAFASI
LAQGWTDAIGKVHSKVPFTFWDYRRKRWERDAGLRIDHILVGHSLKLLDAGVEREERGKE
SPSDHAPVWAELTVEKARAVRKPTIAATKSLSTKKAERTAKAKPPSTPEPLAQYKAKRDF
TKTSEPTGAAAKLPRRAKGAADPLQFVIQKHWASRLHYDFRLEMDGVMVSWAVPKGPSFD
PKVKSMAIHVEDHPTDYNTFEGIIPKGEYGAGKVLIWDRGTWEPVGDPRDGLAKGKIMFH
LHGQKLAGLWELVRISKPGEKKQDQWMLFKKRGDAWARPSTEYDVIAALPDSVVETPLGL
AEERVPVVGTTGSALGATSQPLANARKSRLPAKLEPQLATLVSSVPDGDWIIETKFDGYR
ILARVKGDEVRLYTRNGNDWTEKLQQVADGISELGLTRAWLDGEIVVLNDAGIPDFNRLQ
NAIDNARTRDIVMFVFDVPYLGDQDLRSVPLVARRQLLQELFDKRESSTVRFSQAFEVAP
SQLLGVACDMGLEGLIIKRADATYVSGRTDSWMKLKCQYRQEFVVLGFTDRTGAPKEVGS
LLLGYHEEGKLVAAGSVGTGWGSSTGAELHARLVKLEVPDPPLDAAEFKPGRWSKRKVGA
ERWVRPSLVVEVAFGEWTADKRIRHAVFRGIRTDKPAKMIVRERVKNPAAPALAPVAPES
KAARTISKVNITHPDRVIDPTTGLRKIDLVRYYESVAEWMLPHLKDRPASLVRAPTGITG
QLYFQKHPESKMPGLKELDPALWPGHEALLAVNSAYALIAAAQMNVVEFHTWNSKVARID
QPDRFVLDLDPGEGVTWPMLQEAAQLTRVMLAELGLECWLKTSGGKGLHVVVPITPKRDY
TEVKAFSQGVVKHIARVIPSRFVSVMGGKNRVGRIFIDYLRNGHGQTTACAFSARSRPGM
GVSMPVGWEQLKELKGGAQWTVATAREYLSFQQEDPWREFWKKRQSVDSAIKILAET
NT seq 3414 nt   +upstreamnt  +downstreamnt
gtgcgcgtcgcgacgtggaacgtcaacaacgtcaacaagcgtgtagcgctgctggtggac
tggctgcaacgcacccagcccgatgtggtcgcgctgcaggaaatcaaatgcccgacggct
gattttccgaccgccgcgctgcaggaggccgggtacagcagcctggtggtggggcagcgc
acctggaacggcgttgccatactgagccgcaatgcggaccctctgcccatcgtcacggcg
ttgcctggtgactcgacagacaaggaggcgcgctacctggaggcggccatcacggggatc
ttgtttgcctgcctgtatttgcccaacggcaatccccagccgggtcccaagttcgactac
aagcttcgctggttcgagcgcctacggcgccgtaccgaggagctctggcattccgggcac
cctgtggtgctgttgggggactggaacgttgtgcccacggacgcagatatctacaaaccc
gatacttggcgcgatgacgcgctgttgcagccggaggcgcgtgccgcctttgccagcatc
ctggcgcaaggttggacggatgccatcggcaaggtccatagcaaggtgcccttcacgttc
tgggattaccggcgcaagcggtgggaacgcgacgccgggctgcgcatcgaccacattctc
gttggacactcgctgaagctgctggacgcgggagtggaacgcgaggagcgcggcaaggag
agtccgagcgaccatgccccggtgtgggcggagctcactgtcgagaaagcacgagcggtg
cgcaaaccgaccatagctgccacgaaatcgctttccacgaagaaggccgagaggacggcg
aaagccaaacccccctccactcctgaaccgctcgcacagtacaaggccaagcgcgatttc
acgaagacttccgaacccaccggcgcagctgcgaagctgcctcgtcgcgcaaagggcgcg
gcggatccattgcagtttgtgatccagaaacactgggcgtcccgtctgcactacgacttc
cggctggagatggacggcgtcatggtgagctgggcggtgccaaaaggtccatcgttcgac
cccaaggtcaagtccatggccattcatgtcgaggaccaccccaccgactacaacaccttc
gaggggatcattccgaaaggcgagtacggcgccggcaaggtcctcatctgggaccgcgga
acatgggagcccgtgggcgatcctcgcgacgggctggccaagggcaaaatcatgttccac
ctccacggccaaaagcttgcgggtctttgggaacttgtgcgcatctcgaagcctggcgag
aaaaagcaggatcagtggatgctgttcaagaaacgcggcgacgcctgggcacggccgagc
acggagtacgacgtcatcgccgcgctgcccgacagcgtggtcgagacgccgctgggactc
gcggaggaacgtgtgccggtcgttggcacgacgggatccgcacttggcgccacatctcaa
ccgctggcgaacgccagaaaatcccgccttcctgccaagctggagccgcaactcgccacg
ctggtgtcgtcggtccctgatggcgactggatcatcgagaccaagttcgacggctatcgc
attcttgcgcgcgtgaagggagacgaggttcgcctctatacgcgcaacggtaatgactgg
acagagaagctgcagcaggtggccgatggcatctccgagcttggcctgacgcgcgcttgg
cttgatggggagatcgtggtgctgaatgacgccggtatcccggatttcaaccgccttcag
aacgcgatcgacaacgctcgcacgcgggacatcgtgatgttcgtgttcgatgtgccctac
ctgggcgatcaggaccttcgcagcgtaccgctggtagcgcggcggcagctgctccaggag
ctcttcgacaaacgcgagagcagcaccgtccggttcagccaggctttcgaggtcgcgccc
tcccagcttttgggcgtcgcctgcgacatggggctggagggcctgatcatcaagcgggcg
gatgcaacgtatgtatccgggaggaccgacagctggatgaagctcaagtgccagtacagg
caggagttcgtggttctgggattcaccgaccgcactggcgctcccaaagaggtcgggagt
ctgctgctgggttatcacgaggaggggaagcttgtggcggccggatccgtaggcacggga
tggggttcctcgacgggggccgaactgcatgcccgattggtgaagctcgaagttccggac
ccgccactggacgcagccgagttcaagccgggccggtggtccaagcgcaaggtcggtgcc
gagcggtgggtccgtccctccctggtggtggaggtggcttttggcgaatggaccgccgac
aaacgcattcggcacgcggttttccgaggtatccgcacggacaagccggcgaagatgatc
gtccgcgagcgcgtgaagaacccagccgccccagcgcttgcccccgttgcgccagagtcc
aaggcagcgcggacgatctccaaggtcaatatcacccatcccgaccgggtgattgacccc
accacgggattgcgcaagattgatcttgtgcgctactacgagagcgttgccgagtggatg
ctgccccatctcaaggatcgcccggcatcgctggtccgagcgccaaccgggattacgggg
cagttgtattttcagaagcacccagaaagcaagatgcccgggctcaaggagctggacccc
gccctgtggcccggacacgaggcgctgttggctgtgaactccgcctacgcgctgattgcg
gcagcgcagatgaacgtggttgagttccacacgtggaactccaaggtcgcccgcatcgac
cagccggaccggttcgtgctcgaccttgatcctggagagggtgtcacctggccgatgctt
caggaggccgcgcagctcacccgcgtgatgctcgccgagctggggctggagtgctggctc
aagaccagcggtggaaagggactgcacgtagtggtgccgatcacgcccaagcgcgactac
accgaggtgaaagcgttctcgcaaggcgtggtgaagcacatagcgcgggtgatcccaagc
cggttcgtttctgtgatgggcggcaaaaaccgcgtcgggagaatcttcatcgactacctt
cgcaacggtcatgggcagaccaccgcgtgcgccttctcagcgcgctcgcggcctgggatg
ggggtttcgatgccggtgggttgggagcagctcaaggagctcaagggcggcgcgcagtgg
acggttgcgacggcgcgggagtatttgagttttcagcaggaagatccctggagggaattc
tggaagaagcggcagtcagtcgacagtgccataaaaatactcgctgaaacatag

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