Delftia lacustris: I6G47_29610
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Entry
I6G47_29610 CDS
T06974
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dla
Delftia lacustris
Pathway
dla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G47_29610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dla03019
]
I6G47_29610
03009 Ribosome biogenesis [BR:
dla03009
]
I6G47_29610
Enzymes [BR:
dla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I6G47_29610
Messenger RNA biogenesis [BR:
dla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6G47_29610
Ribosome biogenesis [BR:
dla03009
]
Prokaryotic type
rRNA processing factors
I6G47_29610
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QPS81074
UniProt:
A0A7T2YSM6
LinkDB
All DBs
Position
complement(6373376..6376489)
Genome browser
AA seq
1037 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARINEVIREGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRTAPELQ
WDLNYLLKLWNAIDGAAKSAKGAFLIYQESSLVIRAIRDYFNGDIGDILIDTDDIYEQAQ
QFMQHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSI
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRGEITKIELKQRVNVIMVPNKSMDTPH
YKLERLKHDDARLESMEASYKLAEELDTETTVTRRSQEPTNKQTPMIKGVLPDMPAPIAE
PRPEGSRNRPANGQQRDAKPAATAAAPAPAAAPVVVREQGFFAWLKSLFGFGAAPAPVAA
PVPAAEAPAREGRRDGRNDSRGRRNERNGERGGERTERSGERAGAPNAERQAGGGDRNRR
NAERGERTERGERGERPDRGERGERTDRGERRGRGERSRDGENRQPLEAVNASAALAADG
STLEQRPERAPRGDRQERGEGRRERGERGERGDRAERGERSERQPRQFEVAPESEEKLDN
QAQQQDQSLDNAAPASGEEQPRQRRSRDRYGRDRRERGDRGDRAERAPREAEGEAVQSFE
ASVPEQDQQPARRSYFNAANSAAEVQAPEAVAEATVAAQPAAVVEVQQPVAVPEQQSAAF
APVAPAPVAAPAVTADVPAPAAPAASAASAAAEPAAAKAAEATAERGLPKVQAYQLPVSE
LQALAAASGLQWVGSDADKVAAAQAAIAAEPQPERVVRERPPMVVLDDGPLILVETRKDL
SDLQLPFEQQPQGVAHV
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgccacgcagtcggaagagcggcgccttgccatcgtcgat
ggacaaaagctcctcgactacgagatcgagatcgaaggacgcgagcagcgcaagggcaac
atctacaaggccgtggtcacgcgcgtggagcccagccttgaggcctgcttcgtcgactac
ggcgaagaccgccacggcttcctgcccttcaaggaaatctccaagcagtatttcgccgaa
ggcgtctcccccagccaggcccgcatcaacgaagtcatccgtgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcatctcg
ctggccggccgctatgtggtgctgatgcccaacaacccgcgcggcggtggcgtctcgcgc
cgcatcgagggcgaggaccgtgccgaactcaaggaggcgatggaccagctcgagtacccc
aagggcatgtccatcattgcgcgcaccgccggcatcggccgcaccgcgcccgagctgcag
tgggacctgaactacctgctcaagctgtggaacgccatcgatggcgcagccaagtcggcc
aagggcgccttcctgatctaccaggaatcgagcctggtgatccgcgccatccgcgactac
ttcaacggcgacatcggcgacatcctcatcgacaccgacgacatctacgagcaggcgcag
cagttcatgcagcacgtcatgcccgagcatgccgcccgcgtcaaacgctaccgcgacgat
gcccccctgttcagccgtttccagatcgagcaccagatcgaatcggcctacgcgcgcacc
gtgaccctgccctcgggcggcgccatcgtcatcgatcacaccgaggccctggtctccatc
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaaccgccacccgcacc
aatctggaagccgccgacgaagtcgcgcgccagatgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaggagagcaagaaccgccgcgaagtcgagaatcgc
ctgcgcgacgcgctgcgccaggaccgtgcgcgcgtgcagttcggcaccatcagcaagttt
ggcctcatggaaatgagccgccagcgcctcaagcccgccctgtccgaaggcgcgcacatc
aactgcccgcgctgcggcggctccggtcatatccgcgatacggaaagctctgcgctgcag
atcctgcgcatcatccaagaagagtccatgaaggacaacacggccgccgtgcactgccag
gtgcccgtggaagtggccagcttcctgctcaacgaaaagcgcggcgagatcaccaagatc
gaactcaagcagcgcgtcaacgtgatcatggtccccaacaagtccatggacacgccgcac
tacaagctcgagcgccttaagcacgacgatgcgcgcctggaaagcatggaagccagctac
aagctggccgaagagctggacaccgaaaccacggtgacacgccgctcgcaggagcccacc
aacaagcagacacccatgatcaagggtgtgctgccggacatgccggctcccattgccgag
cctcgtcccgaaggcagccgcaaccgcccggccaacggccagcagcgcgacgccaagcct
gcagccacggcggcagcgcccgcaccggccgccgcccccgtcgtggtccgcgaacaaggc
ttctttgcctggctcaagagcctgttcggctttggcgcggcacctgcgccggtcgcagcg
cccgtgccggctgccgaagcccccgcacgcgaaggtcgccgtgacggccgcaacgacagc
cgtggccgccgcaacgaacgcaatggcgagcgtggtggtgagcgcaccgagcgcagcggt
gagcgcgccggcgcccccaacgccgagcgccaggctggcggtggcgatcgcaaccgccgc
aatgccgagcgtggcgagcgcacggaacgcggtgaacgtggtgagcgcccggatcgtggc
gagcgcggtgaacgcaccgaccgcggcgaacgccgcggccgtggcgagcgcagccgcgac
ggcgaaaaccgccagccgctggaggccgtgaacgcctccgcagccctggcggcagatggc
agcaccctcgagcagcgtcccgagcgcgcgccgcgtggcgaccgccaggaacgcggcgaa
ggccgccgcgagcgcggtgaacgaggcgagcgtggagatcgcgccgaacgcggtgaacgc
agcgagcgccagccccgtcagttcgaagtcgcgcccgagtccgaagaaaagctggacaac
caggcccagcagcaggaccagtccctggacaacgctgctcccgcctccggcgaagagcag
ccgcgccagcgtcgttcgcgcgaccgctacggccgtgaccgccgcgagcgtggcgatcgc
ggtgaccgtgcagagcgcgcgccgcgtgaagccgaaggcgaagccgtgcagtccttcgag
gcctccgtgcccgagcaggaccagcagccagcccgtcgcagctacttcaacgccgccaac
tctgctgccgaagtccaggcccccgaagccgtggccgaagccacagtggccgcacagcct
gcggcagttgtggaagtgcagcaacccgtcgcggtgcccgagcagcagagcgcggccttc
gcgccggtcgcaccggcccccgtggcggcccctgccgtgacggcagacgtgccagcacct
gctgcacctgccgcttctgctgcttctgccgcagcggagcccgctgcagccaaggccgct
gaggcaaccgcagaacgcggcctgcccaaggtccaggcctaccagttgcccgtgtccgag
ctgcaggcgctggccgccgcctcgggcctgcaatgggtgggctccgatgccgacaaggtg
gccgctgcgcaggcagccatcgcggccgaaccgcagcccgagcgcgtcgtgcgcgagcgc
ccgcccatggtcgtgctggatgacggtcctctgatcctcgtggaaacacgcaaggacctg
agcgacctgcagctgccattcgagcagcaaccgcagggcgtggcccatgtctga
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