Delftia lacustris: I6G47_31320
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Entry
I6G47_31320 CDS
T06974
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dla
Delftia lacustris
Pathway
dla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G47_31320 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dla03019
]
I6G47_31320 (rnr)
03016 Transfer RNA biogenesis [BR:
dla03016
]
I6G47_31320 (rnr)
Enzymes [BR:
dla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I6G47_31320 (rnr)
Messenger RNA biogenesis [BR:
dla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6G47_31320 (rnr)
Transfer RNA biogenesis [BR:
dla03016
]
Prokaryotic type
tRNA degradation factors
I6G47_31320 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QPS81395
UniProt:
A0A7T2YSN9
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All DBs
Position
6756044..6758611
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AA seq
855 aa
AA seq
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MNPHAKSADANDEIGGSVQGHRDGHGFVIRDDGEGDIFLPPNEMRAVLHKDRVKVRIVRQ
DRRGRPEGRVVEIIERPAHNIIGRFLQESGVYLVAPEDKRYGQDILIPANATGSAKIGQV
VVVELTEAPALFGQPVGRIIEVLGEVDDPGMEIEIAVRKYGVPHVFSDACLAQAKALPDR
VRPADRKNRIDLTDVPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSHYVTT
GSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAKGDIHAY
QFYPAVMHSHARFTYNEVAAILANTRGPEAAKRSDRVGDLLNLHGVYQALLKSREARGAV
DFETTETQIVCDENGRIEKIVPRTRNEAHKLIEEAMLAANVCSADFIEHSGRVGLFRVHD
KPSLEKQDILRNYLKAMGVGMALGENPATSEFQAIANATKDRPDAQQIHTMLLRSMMQAF
YTPENSGHFGLAFDAYTHFTSPIRRYPDLLVHRVIKAELEGTHYRLPELPTPGEAEAKLA
KRLASRVSAPGQKPRKRAPAAEVQAWEAAGLHCSANERRADEASRDVEAWLKCKYMREHL
GEEFAGVVSAVTTFGIFVTLDAMYVEGLVHITELGGDYFRFDEARQELRGERSGIRYGIG
TRLRVQVSRVDLDGRRIDFRLVRDGEEQPASGRSGRVPARTEAHQGEKWGRRDAKEKRAQ
RNSGGVGGARSESDGAVSSGKQGRKASKKAMVKGVNLAALEAEYASAQSRPAAPVRQSDV
SEPAVVPGSSAPAARASRRGRAAEARQSVAVDADHGLPQLPPPSPVQALRALGKKALGAV
KSKVAGKTSKPRRKP
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctcacgcaaaaagtgccgacgcgaacgacgaaatcgggggcagtgtgcagggg
caccgcgacggacatggcttcgtcatccgtgatgacggcgaaggcgacatcttccttcct
cccaatgaaatgcgtgcggtgctgcacaaggaccgtgtcaaggttcgcatcgtgcggcag
gaccgccgcggcaggcctgaaggccgcgtggtcgagatcatcgagcggcctgcgcacaac
atcattggccgcttcttgcaggaaagcggcgtgtatctggtcgctcccgaagacaagcgc
tacggccaggacatcctgatccctgccaacgcgacgggttcggccaagatcgggcaggtg
gtcgtggtggagttgaccgaggcgcctgcactgttcggccagcccgtggggcgcatcatt
gaagtgctcggtgaggtcgacgatcccggcatggagatcgagattgcggtgcgcaagtac
ggcgtgccccatgtgttttccgatgcctgcctggcacaggccaaggccctgccggacagg
gtgcggcctgccgatcgcaagaatcgcatcgatctgaccgatgtgcccctagtcaccatc
gatggcgaggatgcgcgcgacttcgacgacgccgtctactgcgagcctgccaaggtcggg
cgcggcaagggctggcgcctgctggtggcgattgccgatgtgagtcactacgtgaccacg
ggcagtgccatcgatatcgatgcctatgaccgtgccaccagcgtctatttcccgcgccgc
gtgatccccatgctgcccgagaagctcagcaatggcctgtgctcgctcaatcccgatgtg
gatcgcctgtgcatggtctgcgacatgctgatcactgcaaagggcgatatccatgcctat
cagttctaccccgcggtgatgcacagccatgcgcgcttcacctataacgaggtggctgcc
atcctggccaatacgcgtggcccggaggctgccaagcgctccgatcgcgtgggcgacttg
ctgaatctgcatggggtgtaccaggcgctgctcaagtcgcgcgaagcacgcggcgccgtg
gacttcgagaccacggagacgcagatcgtctgtgacgagaacggccgcatcgagaagatc
gtgccgcgcacgcgcaacgaggcgcacaagctgatcgaggaggccatgctggccgccaac
gtctgcagcgcggacttcatcgagcacagcggccgcgttggcctgttccgcgtgcacgac
aagccctcgctggagaagcaggacatcctgcgcaactacctcaaggccatgggagtgggt
atggcgcttggcgagaatccggccacgtccgaattccaggccattgccaatgccaccaag
gaccggcctgatgcccagcagatccacaccatgctgctgcgctcgatgatgcaggccttc
tacacgcctgaaaattcgggccacttcgggctggccttcgatgcctatacgcacttcacc
agtccgattcgccgctatcccgacttgctcgtgcaccgcgtgatcaaggccgagcttgaa
ggcacgcactaccgcttgcccgagctgcccacgcctggagaggccgaagccaagctggcc
aagcgtctggcctcgcgtgtcagtgcacccggccagaagccgcgcaagcgcgcgcccgcc
gccgaggtccaggcctgggaggctgcaggcctgcactgcagcgcgaacgagcgccgcgcc
gatgaggccagccgagatgtcgaggcctggctcaagtgcaagtacatgcgtgagcatctg
ggggaggagttcgcaggcgtggtctctgcggtcaccaccttcggcatcttcgtcacgctc
gatgccatgtatgtggagggtctggtccacatcaccgagctggggggggactacttccgc
tttgatgaggcgcgccaggaactgcggggcgagcgctcgggcattcgctacggcataggt
acgcggctgcgcgttcaggtcagccgtgtggacctggatggccggcgcatcgatttccgc
ctggtgcgcgacggcgaagagcagccggcttcgggtcgttccggcagggtgccggcgcgc
acggaagcccatcagggcgaaaaatgggggcgccgcgacgccaaggaaaagcgtgcgcag
cgtaactccggcggtgtcggcggagcccggtctgaatccgacggcgcggtgtcttccggc
aagcaggggcgcaaggcgtccaagaaggccatggtcaagggcgtgaacctggccgcgctg
gaggctgaatatgcgagtgcccagtcccgcccggccgcgccagtgcgtcaaagcgacgtg
agtgagccggccgtggtgccaggttcgtccgcacctgcggcacgcgcttcccgcaggggc
agggcggctgaagcgcgccagtctgtcgccgtcgatgctgaccacggtctgccgcagttg
ccgccgccatcgccggtgcaggcgctgcgcgccttgggtaagaaggccttgggggccgtc
aagtccaaggtggcaggcaagacatccaagccccggcgcaagccctga
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