Dickeya lacustris: O1Q98_00080
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Entry
O1Q98_00080 CDS
T08984
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dlc
Dickeya lacustris
Pathway
dlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O1Q98_00080 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlc03019
]
O1Q98_00080 (rhlE)
Enzymes [BR:
dlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O1Q98_00080 (rhlE)
Messenger RNA biogenesis [BR:
dlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O1Q98_00080 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WFN55777
LinkDB
All DBs
Position
16175..17572
Genome browser
AA seq
465 aa
AA seq
DB search
MSFESLGLSADILRAVDEQGYREPTPVQHQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL
QLLSQSPAQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMM
KLRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLSKLPAK
RQNLMFSATFSDEIKALANSLLNNPASVEVVRRNTPSELVTQHVHLVDKKRKRELLSHLI
GQQNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGDIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDI
ERLLKREIPRIAIAGYEPDPSIKAEPIQNGRQGGRGGAGRQGERASGGRSSGSRSQGGRE
RDGATSRPAGDRSAPRRDTGAKPAGQRPQGQAARRRPPRKPATNA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatctctcggcctgagtgccgatattttgcgtgcggtagacgagcaaggt
tatcgcgagcctacccctgttcagcatcaggcgattccggtggtactggcggggcgcgat
ctgatggccagcgctcagaccggtacgggtaaaactgccgggtttactctgccactgctg
caattactgagccagtcgcctgcgcaggcgaagggtcgccgtccggtacgtgcgctgatt
ttgacgccgacgcgtgagctggctgcgcagattggcgagaacgtgcaggcttacagcaaa
tatctgcgcttgcgctcgctggtggtatttggcggtgtgagcatcaatccgcagatgatg
aaactgcgcggcggggtcgatattcttatcgcgacgccggggcggttgctggatttggaa
caccaaaacgccgtcgatttatcccacgtagagatcctggtgctggatgaagccgacaga
atgctggacatgggcttcattcacgatattcgtcgggtgttgtcaaagctgccagccaaa
cggcaaaacctgatgttctccgccaccttctctgatgaaatcaaagcgcttgccaactcg
ttgctcaataacccggcttcggtcgaggtggtgcgccgtaatacgccgtctgagctggtg
acgcagcatgtccatttggtggataagaaacgtaagcgcgagctgttgtcacacctgatt
ggccagcaaaactggcaacaggtgctggtgtttacccgcaccaaacatggcgcgaaccat
ttggccgagcagttgaataaagacggtattaccgctgcggctattcacggcaataaaagc
caaggggcgcgcacccgcgcgctggcagactttaaagcgggcgacattcgcgtgctggtg
gcaacggatattgctgcccgtgggctggatatcgaccagttgccgcacgtggtgaactat
gagttgcctaacgtgccggaagattatgtccaccgtattggccgtaccggtcgtgccgcg
tctaccggtgaagcgctgtcgctggtgtgtgtcgatgagcacaaattgctgcgtgatatc
gaacggctgttaaagcgtgagattccgcgtattgcgatagcgggctatgagccagacccg
agcataaaagccgagcctatccagaatgggcgtcagggcgggcgcggcggtgcgggacgt
cagggcgagcgcgcatcgggcgggcggtcatcaggctcgcgttcgcagggggggcgtgag
cgtgatggggcgacgtctcgtccagcgggcgatcgcagtgcgccgcgccgcgataccggg
gcgaaaccggcaggccagcgcccgcaagggcaggcggcccggcgtcgtccaccgcgtaaa
ccggctactaacgcctga
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