Dickeya lacustris: O1Q98_00510
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Entry
O1Q98_00510 CDS
T08984
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
dlc
Dickeya lacustris
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dlc03009
]
O1Q98_00510 (rimO)
Enzymes [BR:
dlc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
O1Q98_00510 (rimO)
Ribosome biogenesis [BR:
dlc03009
]
Prokaryotic type
ribosomal protein modification factors
O1Q98_00510 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
NTPase_1
CLP1_P
YajR_YAM
Methyltransf_2
DUF5005
Motif
Other DBs
NCBI-ProteinID:
WFN55851
LinkDB
All DBs
Position
complement(114284..115687)
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AA seq
467 aa
AA seq
DB search
MTVNTFDPTQTTTLSAPQKALGEQPAHTSADSSRKIGFVSLGCPKNLVDSERILTELRTE
GYEVVPSYNDADLVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKENQIREVH
PKVLEITGPHSYEQVLNHVHHYVPKPEHNPFTSLIPAQGVKLTPRHYAYLKISEGCDHRC
TFCIIPSMRGDLDSRPIGSVLDEAKRLADAGVKELLVISQDTSAYGADVKHRTGFWNGQP
VKTSMASLCEQLSTLGLWVRLHYVYPYPHVDDVIPLMAQGKILPYLDIPLQHASPKILKL
MKRPGAVERTLERIKRWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLQEAQLDRVGCF
RYSPVEGARANELPNQVPEEIKEDRYHRFMQVQQQISSQRLQAKIGRTLTVLIDEVDEEG
AIGRSVADAPEIDGAVYLNGETGVKVGDWVTVKIEHADEYDLWGTRV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgactgttaacaccttcgatccaacccaaaccaccacgctatctgctccacaaaaggcg
cttggcgaacagcccgcccacacgagcgcagattcgtctcgcaaaataggctttgtcagc
ctcggttgcccgaaaaatctggtggattcggagcgtatcctgacggaattgcgtaccgaa
gggtacgaggtggtgcccagctataacgatgccgatttggtcattgttaatacctgcggt
ttcatcgacagtgcggtacaggaatctctggaagcgattggcgaagcgctcaatgagaac
ggcaaagtgatcgtcaccggatgtctcggtgccaaagagaaccagattcgtgaagttcac
ccgaaagtgctggagattaccggcccgcacagttatgagcaggtactcaaccatgttcac
cattacgtgccgaaaccagaacataacccgtttaccagcctgattccggcccaaggcgtt
aagctcacgcctcgccattacgcttatctcaagatttctgaagggtgcgatcaccgctgt
acgttctgcattattccttccatgcgtggtgatttagacagccgccctatcggttcggtg
ctggatgaagccaaacggcttgccgatgccggcgttaaagaactgctggtgatttctcag
gacacctctgcctacggtgccgacgtcaaacaccgtaccggcttttggaacggccagccg
gtaaaaaccagcatggcgagcctgtgtgagcagctatcaacgctaggtttatgggtgcgt
ctgcactacgtttacccctatccgcatgttgatgacgtcattccgctgatggcgcaagga
aaaatcctgccgtacctggatattccgctacagcatgccagcccgaaaatcctgaaactg
atgaaacgcccaggcgcggttgagcgcacgctcgagcgcatcaaacgctggcgagaaatc
tgcccggatctcacgttgcgctcgacctttattgtcggcttccccggcgaaacggaagaa
gacttccaaatgctgctggatttcctgcaagaggcccaattagatcgcgtaggctgtttc
cgctatagcccggtagaaggcgcgcgggcgaatgaactcccgaatcaagtgccggaagag
ataaaagaagatcgctaccatcgctttatgcaggtacagcaacagatctcaagccaacgc
ttgcaggcaaaaataggacggacactgacggtgctcatcgatgaagtcgatgaagaaggc
gctattggccgcagcgtagccgatgcccctgaaatcgacggcgcggtttacttaaatggc
gaaaccggtgtgaaagtgggcgattgggtaacagttaaaatcgaacacgccgatgaatat
gacctgtggggaacgcgcgtctaa
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