Dickeya lacustris: O1Q98_03780
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Entry
O1Q98_03780 CDS
T08984
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dlc
Dickeya lacustris
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dlc03016
]
O1Q98_03780
Enzymes [BR:
dlc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O1Q98_03780
Transfer RNA biogenesis [BR:
dlc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
O1Q98_03780
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WFN56430
LinkDB
All DBs
Position
840966..842897
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGTVKATDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
IVTLHTEKDREIAEPESLVEPFLSRFVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQ
DFKEGDWAVAEMRRHPLKGDRGFFADLTQYITTGDDPLAPWWVTLSRHNLERTAPQAEAA
ALDDGALSREDLTGLDFVTIDSASTEDMDDALYVKALDDGNLEMIVAIADPTAYVPADSE
LDAIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPHERRPVLACSMTIAADGALSQVRFF
AAWIESRAKLVYDEVSDWLEQHGEWQPGSDAIASQIRLLHQVCQARSLWRSTHALVFRDR
PDYRFLLGEKGEVLDIVTEPRRIANRIVEEAMIAANICAATVLRDTLGFGIYNVHNGFDP
SSVEQAVTVLASNGISADAQQLLTLDGFCVLRRELDAQPTQFLDSRIRRFQSFAEISTVP
GPHFGLGLDAYATWTSPIRKYGDMVNHRLLKAIITGTAAEKPHDDVTQQLAERRRLNRMA
ERDVSDWLYARFLKASAGTETRFNAEIIDVNRGGLRVRLLDNGATAFIPASFIHAVRDEL
VCSQETGTVTVKGEAVYRQSDTLDVVLTDVRLDTRSIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccgctgcttgcgcagctaaaacagcaactccactctcagacgcca
cgagcggaaggcaccgttaaagccaccgacaaaggttttggttttcttgaagccgacgcg
cagaagagctatttcatcccgccgccgcacatgaaaaaagtgatgcacggcgatcgtatt
atcgtcacgctgcacaccgaaaaagaccgagaaatcgccgagccggaatcgctggtcgag
ccgttcctgagccgcttcgtgggtcgggtgcagaagaaagatgaccggttatctatcgtg
ccggatcatccgctgctgaaagacgcgatcccctgccgcccggcgcgcggcgtcgagcag
gatttcaaagaaggcgactgggcggttgccgaaatgcgtcgtcatccactcaaaggcgat
cgtgggttctttgctgacctgactcagtacatcaccaccggcgatgacccgctcgcaccg
tggtgggtcacgctgtcacgccacaatctggagcgcaccgcaccgcaggctgaagccgca
gcgctggatgacggcgcgttatcgcgcgaagacctgaccgggctggatttcgtcactatc
gacagcgccagcaccgaagacatggacgatgcgctgtatgttaaagccctcgatgacggc
aatctggagatgattgtcgcgattgccgacccgacagcctatgtcccggcggacagtgaa
ctggatgcgattgcccgtcaacgcgccttcaccaactatctgcccggcttcaatattcca
atgctgcctcgccacctgtcagacgatatctgttcgctgcgcccgcatgagcgtcgcccg
gtgctggcgtgcagtatgacgattgccgctgacggcgcgctcagtcaggtacgtttcttc
gccgcctggattgagtcacgcgccaagctggtatatgacgaggtttccgactggctggag
caacacggtgaatggcagcccggcagtgatgctatcgccagccaaatccgcctgttgcat
caggtttgtcaggcacgcagcctgtggcgctctacccatgcgctggtattccgcgaccgc
cctgattaccgtttcttactcggcgagaaaggcgaagtgctggatatcgtcaccgagccg
cgccgcattgccaaccgcatcgtggaagaggcgatgattgccgccaacatctgtgctgcg
acggtactgcgtgacacgcttggttttggtatctacaacgtgcataacggttttgaccca
tcaagcgtcgaacaggccgtcaccgtactggccagcaatggcatcagcgccgatgcgcag
caattgctgacactggacggtttttgcgtactgcgccgcgagcttgatgcacagccaacg
caatttctcgacagccgtattcgccgcttccagtcgtttgccgaaatcagcaccgtgccg
ggcccgcacttcggtcttggcctggacgcttatgccacctggacatcaccgattcgtaag
tacggcgatatggtcaaccatcgcctgctgaaagcgattattaccggcaccgccgctgaa
aaaccacacgatgatgtgacccaacagttggctgaacgccgccgcttaaaccgcatggcg
gaacgcgatgtcagtgactggctctacgcccgtttcctgaaagcgagcgcaggtacagaa
acccgttttaacgccgaaatcattgatgtgaatcgcggcggcctgcgcgttcggctgctc
gataacggcgcgaccgcgtttatcccagcctcctttattcatgcggtacgtgatgaactg
gtgtgcagccaggaaactggtaccgtcaccgtgaaaggcgaagcggtttatcgccagagc
gatacactcgacgtcgtgctgacggacgtgcgtcttgacacccgcagtatcattgccaaa
ccggcagcctaa
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