Dickeya lacustris: O1Q98_04215
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Entry
O1Q98_04215 CDS
T08984
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dlc
Dickeya lacustris
Pathway
dlc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O1Q98_04215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlc03400
]
O1Q98_04215 (mfd)
Enzymes [BR:
dlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O1Q98_04215 (mfd)
DNA repair and recombination proteins [BR:
dlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O1Q98_04215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WFN56504
LinkDB
All DBs
Position
942929..946381
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPEHYRYTLPGKAGEQRLLGQLTGAACAVECAEIVTRHPGLVVIITPDMQNALRLRDEI
RQFTAEPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPTLTRGVLILPVNTLMQKVCP
HRFLHGHALMLKKGQRLSRDRLRSQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEP
FRIDFFDDEIDSLRLFDSDTQRTLSEVAQINLLPAREFPSDKTAIELFRSQWREQFDVRR
DAEHLYQQVSKGTLPAGIEYWQPLFFAEPLPTLFSYLPDTTLLISVGHIQQAAARFWQDV
QQRYDNRRIDPMRPLLSPENLWLQEDGLFGALKAWPRVQLHTDTLADKAANQNLGYQPLP
QLAVVHQSKTPLDALRRFTEQFDGPIIFCVESEGRRETLQELLSRIKLAPKLITHLDQAT
ASGCYLMIGASEHGFIDTLRQRALICESDLLGERVTRRRQDNRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYAGLTTLTAGGIAAEYLILHYAGEDKLYVPVSSLHLISRYSGGAQEN
APLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAARHGFAFKHDREQYQMFCEGFPF
DTTPDQAQAINAVLSDMCRPIAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHYDNFRDRFANWPVRIDMLSRFRSAKEQTQVLEHTQEGKVDILIGTHKLLQSDIR
WRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGIRDLSIIATP
PARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKATQRLTELVPEARIT
IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GEDQSGQMESVGFSLYMELLESAVESLKAGREPSLEDLISSQTDVELRLPALLPEAFVPD
VNTRLSFYKRIASATTSRELDELKVELIDRFGPLPDAARHLLQVAALRQLAQTLGIKRIE
GNDKGGFVEFGPHNRVDPTYLIGLLQRNPKLYRLDGPTRLKFITALDSYPQRLTFVSDLL
EEMARHTQAI
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgccagaacactatcgctatactctgcctggcaaagcgggtgaacaacgcctgctg
gggcagcttaccggtgcggcttgcgccgttgaatgcgcggagatcgtgactcgtcacccc
ggattggtggttatcatcaccccggatatgcaaaacgcgctgcgcctgcgtgacgaaata
cggcaatttaccgccgagcctgtgatgacgttgccggattgggaaaccctgccttatgac
agcttctcgccgcatcaggagatcatttccgctcgtctgtctacactgtatcagttgccg
acgctgacacgcggagtgcttattctgccggtcaacacgctgatgcagaaagtgtgcccg
caccgttttttgcacggccatgcgctgatgttgaaaaaaggccagcgcctgtcgcgtgac
cggctacgcagccagcttgaacaggccggttatcgcagtgtcgatcaggtgatggagcac
ggcgaatttgcgacccgaggggcgttacttgacctgtttccgatgggcagcgaagagccg
tttcgtattgattttttcgatgacgaaatcgacagcctgcgcctatttgatagcgatacg
caacgcactctgagcgaagtggcccagattaacctgttgcctgcacgcgagtttcccagc
gacaaaaccgccattgagttatttcgcagccaatggcgtgaacagttcgacgtgcgccgc
gatgccgaacatctctatcagcaggtgagcaaaggcacgctgcccgccgggatagaatat
tggcaacccctgttcttcgccgaaccgctgccgacgctgtttagctacctgccggacacc
accttgctgatttccgttggccatattcagcaggctgccgcccggttttggcaagatgtg
caacagcgttatgacaaccgccgcattgacccgatgcgcccgctgctctcgccggaaaac
ctctggttacaggaagatgggctgtttggcgcgctcaaagcctggcctcgcgtgcaatta
cacacggatacgctggcagataaagccgccaaccagaatctgggctatcagccactgccg
cagttggcggtggtacaccaaagtaaaacgccgctggatgcgctgcgccgcttcaccgaa
cagttcgacgggccgatcattttctgtgtcgagagtgaaggccgtcgcgagaccttgcag
gagttgctgtcacgtatcaagctggcaccaaaacttatcacgcatctcgatcaggccacc
gcatcgggctgttatttgatgattggtgccagcgagcacggttttatcgacaccctgcgc
cagcgcgcgcttatttgtgagagcgatttgctgggcgagcgcgtcacgcgtcggcgtcag
gacaaccgacgcaccatcaataccgatactttaattcgcaatctggccgagttgcgccca
ggccagccggtcgtccatctggagcacggcgtgggccgctatgccggactgaccacgctc
accgccgggggtatcgcagccgaatacctgattttgcactacgccggtgaagataaactg
tacgtgccggtttcctcgctgcaccttatcagccgctattcaggtggcgcgcaagagaat
gcgccgctgcacaaactcggtggcgatgcctgggtacgcgcccggcaaaaagcggcggaa
aaagtccgcgatgtggcggccgaattgctggatgtttacgcccagcgcgcggcccgacat
ggttttgccttcaagcatgaccgcgaacagtatcagatgttctgtgagggtttcccgttt
gacaccacgcccgaccaggctcaggccatcaacgccgtactcagtgacatgtgccgccct
atcgccatggacaggctggtgtgcggcgatgtcggttttggtaaaaccgaagtggcgatg
cgcgcggcgtttctggcggtagaaaaccacaagcaggtggcggttctggtgccaaccacc
ctgttggcccagcagcattacgataacttccgcgaccgctttgccaactggccggtacgc
atcgacatgctctcgcgctttcgcagcgcaaaagagcagacgcaggtgctggaacacacg
caggaaggcaaggtggacattctgattggcacccataaattgctgcaaagcgacattcgc
tggcgcgatctggggctgttgattgtcgatgaagagcaccgctttggcgttcgccacaaa
gagcgcattaaagcgatgcgggccgatgtcgatattctgacgctcaccgccacgcctatc
ccgcgtaccctgaatatggcgatgagcggcattcgcgatctgtcgattattgccacaccg
cccgcacgccgtctggcggtgaaaacctttgtgcgtgaatatgacagcctggtggtgcgc
gaggccattctgcgtgaaatactgcgcggcgggcaggtgtactacctttataacgatgtc
gaaaatattgaaaaagccacccagcgcctgacagaactggtgccggaagcccgcatcacc
atcggccacggccagatgcgcgagcgcgatcttgaacgggtgatgaacgatttccatcac
cagcgtttcaacgtactggtttgtaccaccattattgaaaccggcattgatattccgagc
gccaacaccatcattattgaacgggccgaccattttggcctggcgcagttacaccagttg
cgtggccgcgtcggacgctcacaccatcaggcttatgcttatcttctgacccccaacccc
aaagcgatgagcagcgatgcgcacaaacggcttgaggctatcgcatcactggaggatttg
ggcgcgggctttgcgctggccacccatgatttggagattcgcggtgccggggagttgctg
ggcgaggatcagagcggccagatggaaagcgtgggcttctcgctttacatggagttgctg
gaaagcgcggttgagtcgctcaaggccgggcgcgaaccctcgctggaggatttaatcagc
agccagacggacgtggaattgcgcctgccagcgctgttgccggaggcatttgtgcctgac
gtcaatacccgcttgtccttctataaacgcatcgccagcgcgaccaccagccgtgagctg
gatgagctgaaagtcgagctgattgatcgtttcggccccttgccggatgccgcgcgccac
ctgctacaggtcgcggctctacgccagttggcgcaaacgctcggtatcaagcggattgaa
gggaatgacaaaggcggatttgtcgaattcggcccgcataaccgcgttgacccgacctac
ctgatagggttattgcagcgcaacccgaaactgtatcggctagacggcccgacccggctt
aaattcattaccgcgctggatagttacccgcagcggctgacgttcgtcagcgatttactt
gaggagatggcgcgccatacccaggcaatataa
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